Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 0.0e+00 2193.3 1110 100.0
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 6.6e-290 1001.1 1152 50.0
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 6.2e-280 968.0 1160 49.1
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 2.3e-274 949.5 1143 49.1
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 4.8e-272 941.8 1163 47.8
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 5.3e-271 938.3 1163 47.6
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 3.2e-268 929.1 1163 46.1
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 7.1e-260 901.4 1160 45.8
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 3.5e-259 899.0 1171 45.8
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 3.9e-258 895.6 1173 45.7
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 4.3e-257 892.1 1170 45.1
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.3e-256 890.6 1169 45.4
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.6e-256 890.2 1173 45.5
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 2.1e-256 889.8 1160 45.8
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 3.9e-250 869.0 1166 44.9
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 3.7e-248 862.4 1142 44.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 2.7e-243 846.3 1167 43.6
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.9e-241 840.1 1169 44.7
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-240 837.0 1146 43.9
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 6.3e-240 835.1 1163 44.1
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.1e-236 824.3 1166 43.7
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 2.2e-232 810.1 1198 42.6
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.1e-231 806.2 1159 44.2
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 4.1e-231 805.8 1196 42.2
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 3.9e-226 789.3 1155 42.2
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 3.9e-226 789.3 1161 42.5
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.3e-224 784.3 1185 42.1
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 2.2e-224 783.5 1160 41.7
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 6.3e-224 781.9 1171 42.7
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.4e-223 780.8 1152 42.9
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.8e-223 780.4 1163 42.5
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 2.6e-222 776.5 1018 46.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.5e-220 770.0 1102 44.4
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.5e-220 770.0 1094 43.7
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.6e-219 767.3 1157 41.0
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.4e-218 764.2 1155 41.3
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 9.7e-217 758.1 983 47.1
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.0e-210 738.0 1163 39.8
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 3.4e-209 733.0 1153 40.1
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 6.3e-208 728.8 1183 40.8
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.7e-206 723.4 1157 39.3
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 3.8e-205 719.5 1159 39.3
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.0e-202 711.4 1168 39.3
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 2.2e-200 703.7 1168 38.6
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 3.7e-200 703.0 1164 38.9
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 5.4e-199 699.1 1168 39.1
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.6e-198 697.6 1166 38.3
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.6e-198 697.6 1158 38.3
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 5.0e-197 692.6 1169 37.8
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 5.0e-197 692.6 1169 37.8
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.4e-194 684.5 1141 38.9
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.0e-193 680.6 1170 37.7
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.2e-191 671.8 1178 37.4
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 3.5e-190 669.8 1151 36.9
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 6.6e-189 665.6 1160 37.8
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 8.6e-189 665.2 1147 36.6
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 8.6e-189 665.2 1139 36.8
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 8.6e-189 665.2 1173 37.2
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 7.3e-188 662.1 1158 38.2
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.2e-187 661.4 1143 36.9
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 4.7e-187 659.4 1148 36.4
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 6.2e-187 659.1 1141 36.7
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.3e-184 651.4 1160 37.3
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 8.3e-184 648.7 1259 36.5
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 4.6e-182 642.9 1152 35.8
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.7e-181 641.0 1147 35.9
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 6.6e-181 639.0 995 41.4
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 8.6e-181 638.6 1156 36.2
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 3.3e-180 636.7 1145 36.7
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 7.3e-180 635.6 945 41.3
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 6.2e-179 632.5 1147 35.6
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.2e-177 628.2 1127 38.1
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 7.5e-177 625.5 1131 38.0
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 7.5e-177 625.5 1162 36.6
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 7.5e-177 625.5 1168 36.9
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.4e-175 620.5 1156 35.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 7.8e-174 615.5 1152 35.7
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.0e-173 613.6 1138 35.2
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 6.6e-173 612.5 1153 35.5
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 4.3e-172 609.8 1141 35.1
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 2.6e-169 600.5 1126 36.6
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 4.3e-164 583.2 1135 35.9
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.5e-156 558.1 1217 34.1
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 3.3e-156 557.0 920 38.6
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 2.8e-155 553.9 1152 34.5
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 2.8e-155 553.9 1079 36.3
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 7.1e-151 539.3 1116 35.1
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 9.3e-151 538.9 1218 33.3
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 6.0e-150 536.2 956 37.4
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.9e-148 531.2 985 35.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 1.4e-143 515.0 1254 30.5
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.8e-133 481.5 907 36.5
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.5e-121 441.8 1226 29.9
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.2e-118 432.2 665 42.3
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 8.8e-117 426.0 863 35.5
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 2.7e-110 404.4 884 33.3
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 5.7e-92 343.6 445 44.9
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 1.2e-89 335.9 304 58.2
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 4.1e-82 310.8 301 55.5
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 5.4e-82 310.5 301 55.8
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.9e-81 307.0 300 55.7
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 1.0e-80 306.2 314 53.5
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 3.8e-80 304.3 300 54.7
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 4.3e-79 300.8 1277 25.5
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 3.0e-77 294.7 796 31.3
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.3e-72 278.5 1277 24.2
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 1.1e-69 269.6 312 48.7
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 6.8e-69 266.9 312 49.0
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.4e-68 264.6 430 39.5
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 4.4e-68 264.2 275 52.7
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.4e-66 259.2 314 48.1
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 6.6e-56 223.8 237 52.7
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 8.6e-56 223.4 237 51.9
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.6e-54 219.2 1104 23.9
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.3e-48 198.7 414 32.1
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 3.0e-48 198.4 356 37.4
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 2.1e-46 192.2 176 56.2
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 4.7e-46 191.0 185 55.1
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 8.1e-46 190.3 176 58.5
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.8e-45 189.1 176 56.8
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 4.0e-45 188.0 289 40.5
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.3e-43 183.0 830 25.4
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.1e-42 179.9 171 57.3
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.4e-42 178.7 168 57.7
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 4.0e-37 161.4 188 48.9
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 9.0e-37 160.2 409 29.6
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 2.4e-34 152.1 148 55.4
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.1e-32 144.4 493 26.6
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.9e-31 142.5 330 31.8
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.3e-31 141.7 296 33.1
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.5e-26 124.4 416 28.1
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 7.1e-26 124.0 274 33.2
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 3.0e-24 118.6 228 31.1
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 6.2e-22 110.9 103 54.4
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.2e-17 96.7 99 52.5
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.3e-16 93.2 105 48.6
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.7e-14 85.1 143 32.2
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.9e-13 80.9 86 51.2
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 1.7e-11 76.3 92 39.1
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.9e-10 72.8 92 38.0
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 2.5e-10 72.4 43 65.1
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 5.5e-10 71.2 101 40.6
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 1.2e-09 70.1 87 41.4
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 7.9e-09 67.4 64 54.7
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.1e-07 63.5 134 32.8
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-06 60.1 130 36.2
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 3.7e-06 58.5 97 33.0


User provided reference genes

Program Settings