Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 3.5e-224 781.2 366 100.0
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 3.5e-163 578.6 360 74.4
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-162 576.2 366 74.0
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.7e-162 576.2 362 74.3
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 2.3e-162 575.9 358 73.5
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.5e-161 573.2 362 74.0
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.5e-161 573.2 362 74.0
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.5e-161 572.4 363 71.6
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.5e-161 572.4 362 73.5
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 3.3e-161 572.0 357 73.9
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 9.5e-161 570.5 362 72.1
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.8e-160 568.9 362 72.9
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 2.8e-160 568.9 357 73.4
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.8e-160 568.9 360 71.9
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.8e-159 566.2 367 70.6
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.2e-158 563.5 343 75.5
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.5e-158 563.1 362 71.5
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.0e-158 562.8 362 71.8
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 2.0e-158 562.8 348 72.7
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.9e-157 558.9 360 71.4
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 3.7e-157 558.5 354 71.8
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 3.7e-157 558.5 362 71.3
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 3.7e-157 558.5 360 71.4
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 7.0e-156 554.3 362 71.8
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 9.2e-156 553.9 346 71.7
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-155 553.5 367 71.1
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.7e-155 552.4 362 71.8
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 4.6e-155 551.6 359 69.6
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.7e-154 549.7 347 73.5
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-154 549.7 324 77.2
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 2.3e-154 549.3 364 68.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 6.6e-154 547.7 324 77.2
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 8.6e-154 547.4 324 77.2
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 8.6e-154 547.4 325 76.6
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.5e-153 545.8 343 71.1
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 3.3e-153 545.4 346 71.1
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 3.3e-153 545.4 349 71.3
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 7.3e-153 544.3 363 68.0
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.6e-152 543.1 343 70.8
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.6e-152 543.1 346 70.2
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 2.8e-152 542.3 366 67.8
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 6.2e-152 541.2 365 68.2
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 8.1e-152 540.8 346 70.5
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.1e-151 540.4 362 69.6
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.4e-151 540.0 342 70.8
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 4.0e-151 538.5 375 67.7
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 8.9e-151 537.3 342 70.8
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 8.9e-151 537.3 367 67.8
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.4e-150 535.4 352 70.2
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.4e-150 535.4 356 67.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 3.4e-150 535.4 367 68.1
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 4.4e-150 535.0 366 67.5
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 5.8e-150 534.6 342 70.5
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 5.8e-150 534.6 342 70.5
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 7.5e-150 534.3 344 71.2
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 7.5e-150 534.3 314 75.5
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 9.8e-150 533.9 370 67.6
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.7e-149 533.1 342 71.1
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 2.9e-149 532.3 367 68.1
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.7e-149 531.9 358 68.7
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 6.4e-149 531.2 367 67.3
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.1e-148 530.4 367 68.4
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 4.1e-148 528.5 364 66.5
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 4.1e-148 528.5 357 67.2
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.6e-147 525.0 355 66.2
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 6.0e-147 524.6 362 66.3
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.3e-146 522.7 359 66.0
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.1e-146 521.5 364 67.6
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 5.1e-146 521.5 365 64.9
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 6.6e-146 521.2 350 68.3
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 8.6e-146 520.8 359 66.3
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 8.6e-146 520.8 349 67.6
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.5e-145 519.2 353 70.0
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 4.3e-145 518.5 309 77.0
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.1e-143 513.8 363 64.7
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 5.2e-143 511.5 363 65.6
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.6e-142 509.2 367 63.8
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.6e-142 509.2 357 64.4
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.4e-142 508.8 365 64.9
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 5.8e-142 508.1 361 65.9
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 7.6e-142 507.7 359 68.8
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.7e-141 506.5 414 59.9
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.7e-141 506.5 357 64.4
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.7e-141 506.5 357 64.7
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.9e-140 503.1 342 67.3
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 3.2e-140 502.3 360 64.4
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.1e-140 501.9 363 65.8
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.7e-139 499.2 363 65.3
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 5.1e-138 495.0 343 67.3
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 6.6e-138 494.6 343 67.1
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 2.5e-137 492.7 361 61.5
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.3e-137 491.9 343 67.1
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.1e-136 489.6 344 64.0
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.2e-136 488.0 343 67.3
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 6.2e-136 488.0 343 67.3
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 5.2e-135 485.0 343 64.1
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 6.8e-135 484.6 358 64.2
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 6.8e-135 484.6 436 55.0
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 7.6e-134 481.1 450 52.9
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.4e-132 476.1 342 62.0
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 4.2e-132 475.3 365 61.4
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 2.1e-131 473.0 353 66.0
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 7.8e-131 471.1 364 59.6
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-130 470.7 281 76.5
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-130 469.5 281 76.2
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.9e-129 466.5 366 63.9
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.9e-129 466.5 281 75.8
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.6e-128 463.4 324 64.2
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 2.6e-126 456.1 356 62.1
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 9.9e-126 454.1 360 57.5
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 2.1e-123 446.4 337 60.2
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.1e-120 436.4 273 72.2
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.4e-119 433.7 269 73.2
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 1.6e-115 420.2 312 62.5
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.8e-109 399.1 338 55.6
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 2.5e-108 396.4 286 61.2
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 5.7e-105 385.2 274 62.4
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-102 376.7 232 75.0
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.5e-100 368.6 254 69.3
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 7.9e-99 364.8 319 56.7
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.9e-98 362.5 208 79.3
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 7.7e-94 348.2 357 48.2
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.4e-92 344.0 228 68.4
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.3e-88 330.9 211 70.6
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.1e-87 325.9 262 58.8
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 6.9e-87 325.1 237 63.3
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.5e-86 323.9 346 45.4
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.4e-84 317.4 342 49.1
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.0e-82 311.2 204 70.6
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.0e-82 311.2 360 44.4
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.9e-82 309.3 344 45.9
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.1e-79 299.7 191 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 5.9e-78 295.4 363 43.8
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.3e-77 294.3 186 74.7
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 4.4e-73 279.3 192 65.6
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 5.2e-58 229.2 244 49.6
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.0e-57 227.3 153 68.6
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 4.3e-52 209.5 158 60.8
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 3.6e-43 179.9 141 58.2
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.1e-39 168.3 224 40.6
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 8.1e-35 152.1 112 69.6
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.1e-31 141.7 112 63.4
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.8e-24 116.7 97 58.8
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.0e-21 108.6 102 46.1
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.1e-20 105.1 99 53.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 2.8e-11 73.9 122 32.8
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 9.3e-07 58.9 96 36.5


User provided reference genes

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