Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 3.8e-140 501.5 258 100.0
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.0e-97 358.6 257 73.2
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 8.9e-97 357.5 254 70.9
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 8.9e-97 357.5 257 73.2
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.8e-96 354.8 252 74.6
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.5e-96 354.4 258 73.3
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.5e-96 354.4 258 73.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.3e-95 353.6 253 74.3
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.3e-95 353.6 257 74.3
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.7e-95 353.2 253 75.1
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.9e-95 352.4 256 74.2
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.7e-95 352.1 251 73.3
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.9e-95 351.7 254 72.4
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.3e-95 350.9 253 73.9
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.1e-94 350.5 255 73.7
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 7.1e-94 347.8 251 73.3
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 9.2e-94 347.4 251 72.5
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.1e-93 346.3 255 71.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.7e-93 345.9 257 72.4
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.5e-93 345.5 239 74.9
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.5e-93 345.5 257 71.2
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 6.0e-93 344.7 254 73.2
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.0e-92 344.0 260 71.5
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 2.3e-92 342.8 251 69.7
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.3e-92 342.8 254 70.9
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 3.9e-92 342.0 253 70.8
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 8.6e-92 340.9 253 71.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.5e-91 339.3 244 73.4
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.3e-91 339.0 251 70.1
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.3e-91 339.0 258 70.5
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.3e-91 338.6 255 69.0
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 9.5e-91 337.4 259 69.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.6e-90 336.7 257 73.2
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.6e-90 336.7 260 68.1
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 3.6e-90 335.5 256 72.3
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.6e-90 335.5 255 70.2
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.7e-90 335.1 241 72.6
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.3e-89 332.8 258 69.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.1e-89 332.4 230 72.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 3.1e-89 332.4 260 70.8
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 5.2e-89 331.6 259 69.5
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 6.8e-89 331.3 255 71.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 6.8e-89 331.3 255 70.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 8.9e-89 330.9 256 69.1
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-88 330.5 259 68.0
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 5.8e-88 328.2 266 67.7
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 7.6e-88 327.8 218 75.2
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 9.9e-88 327.4 255 68.6
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.2e-87 326.2 239 70.3
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.9e-87 325.9 261 69.3
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.9e-87 325.9 253 69.6
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.4e-87 324.7 257 69.6
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.4e-86 323.6 259 69.5
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.4e-86 322.8 252 69.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.4e-86 322.8 260 66.9
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 4.1e-86 322.0 253 68.0
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 9.2e-86 320.9 250 68.8
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.6e-85 320.1 260 67.3
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.1e-85 319.7 239 72.0
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.1e-85 319.7 243 70.4
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 3.5e-85 318.9 256 65.6
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.6e-85 318.5 231 71.0
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.0e-85 318.2 259 64.9
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 6.0e-85 318.2 261 67.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.3e-84 317.0 241 70.1
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.3e-84 317.0 255 69.0
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.3e-84 317.0 261 67.4
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.0e-84 315.8 254 67.7
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 3.0e-84 315.8 183 85.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 3.9e-84 315.5 257 68.1
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 3.9e-84 315.5 259 66.0
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 3.9e-84 315.5 235 71.5
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 5.1e-84 315.1 260 65.8
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 5.1e-84 315.1 244 68.9
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 6.6e-84 314.7 256 65.6
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 6.6e-84 314.7 253 67.6
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 8.6e-84 314.3 206 77.2
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.1e-83 313.9 231 70.6
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-83 313.9 261 66.7
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.1e-83 313.9 219 73.5
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.5e-83 313.5 255 65.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.9e-83 313.2 259 66.4
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.9e-83 313.2 259 67.2
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.5e-83 312.8 206 75.7
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.3e-83 312.4 254 65.4
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 9.6e-83 310.8 260 65.0
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 9.6e-83 310.8 182 84.1
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 9.6e-83 310.8 254 65.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.1e-82 309.7 248 68.5
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.8e-82 309.3 260 64.6
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 4.7e-82 308.5 193 78.8
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 8.1e-82 307.8 225 70.7
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.1e-81 307.4 237 68.8
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.5e-80 303.5 251 64.5
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 2.0e-80 303.1 248 66.5
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.4e-79 297.7 256 63.7
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.2e-78 295.4 239 66.1
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.1e-77 293.1 236 68.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 6.0e-77 291.6 194 74.7
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 6.0e-77 291.6 185 80.0
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.3e-76 290.4 188 76.6
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.3e-76 290.4 200 72.0
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.0e-76 289.3 249 65.1
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 6.6e-76 288.1 200 72.0
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.9e-75 286.6 258 65.1
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 3.3e-75 285.8 172 83.1
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.6e-75 285.0 257 61.5
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 9.6e-75 284.3 253 61.3
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.8e-74 282.7 229 65.1
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 6.2e-74 281.6 239 64.0
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.2e-74 281.6 256 60.5
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 5.8e-72 275.0 262 58.4
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.9e-72 274.2 207 68.1
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 9.9e-72 274.2 214 66.4
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.3e-71 273.9 214 66.4
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 2.2e-71 273.1 188 72.3
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.9e-71 272.7 255 60.0
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-71 272.7 249 61.4
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 2.9e-71 272.7 249 61.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 2.9e-71 272.7 249 61.0
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.9e-71 272.7 256 59.0
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 3.8e-71 272.3 263 58.6
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 6.4e-71 271.6 263 58.6
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.1e-70 270.8 208 66.8
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.1e-70 270.8 194 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.4e-70 270.4 200 67.0
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.2e-70 269.2 264 56.8
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.2e-70 269.2 174 74.1
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 4.6e-69 265.4 174 72.4
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 6.0e-69 265.0 184 69.6
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 6.6e-68 261.5 254 55.9
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 9.6e-67 257.7 258 58.5
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 3.1e-65 252.7 149 83.2
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.9e-65 251.5 217 60.4
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.8e-64 248.4 258 57.8
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 2.9e-63 246.1 200 62.0
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.2e-62 242.7 150 76.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.0e-56 223.4 205 62.9
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.3e-55 220.7 133 77.4
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 5.5e-54 215.3 203 61.6
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 7.1e-54 214.9 121 87.6
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.2e-53 214.2 227 55.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.9e-51 206.8 197 60.9
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.4e-51 204.9 121 84.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 3.7e-50 202.6 238 52.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.5e-48 197.2 229 50.2
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 6.5e-47 191.8 238 52.1
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 2.5e-46 189.9 176 60.8
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 4.6e-45 185.7 234 50.4
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.3e-44 184.1 218 49.5
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.1e-43 181.0 124 75.8
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.3e-42 177.6 260 45.0
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.3e-42 175.3 187 57.2
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 6.9e-33 145.2 98 73.5
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 4.7e-29 132.5 75 82.7
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 7.9e-29 131.7 81 79.0
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.3e-28 130.2 103 64.1
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 8.8e-28 128.3 105 68.6
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-27 127.5 79 77.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 7.7e-24 115.2 112 58.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.1e-21 107.1 125 49.6
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 8.0e-21 105.1 207 39.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.3e-19 99.8 88 61.4
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 8.5e-15 85.1 154 38.3
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.5e-14 83.6 50 84.0
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.3e-10 71.2 153 33.3
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 4.8e-10 69.3 141 33.3
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 7.0e-09 65.5 151 30.5
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 4.5e-08 62.8 54 53.7
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 4.5e-08 62.8 88 39.8
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.3e-07 61.2 54 57.4
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 5.5e-06 55.8 60 51.7


User provided reference genes

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