Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 4.3e-255 884.4 525 100.0
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 1.5e-204 716.5 525 84.0
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 2.3e-200 702.6 525 78.5
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 5.1e-200 701.4 525 82.9
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 2.5e-199 699.1 525 82.7
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 7.4e-199 697.6 525 83.4
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 2.1e-198 696.0 525 82.5
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 2.1e-198 696.0 523 82.6
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 2.8e-198 695.7 525 82.7
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 8.2e-198 694.1 523 82.2
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.8e-197 693.0 525 82.7
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 2.4e-197 692.6 523 83.4
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.2e-196 690.3 525 82.3
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 2.0e-196 689.5 525 81.3
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.6e-196 689.1 521 79.5
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 3.4e-196 688.7 525 82.1
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 3.4e-196 688.7 525 82.1
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 4.5e-196 688.3 523 81.3
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 5.9e-196 688.0 521 82.1
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 5.9e-196 688.0 525 81.1
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 7.6e-196 687.6 525 81.1
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 7.6e-196 687.6 525 80.8
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.0e-195 687.2 522 78.2
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.3e-195 686.8 515 77.3
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 1.3e-195 686.8 521 78.7
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.7e-195 686.4 521 78.3
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 2.9e-195 685.6 518 82.0
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.1e-194 683.7 525 77.0
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.4e-194 683.3 522 83.1
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.4e-194 683.3 524 81.9
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.4e-194 683.3 524 81.5
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.9e-194 682.9 523 82.0
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.5e-194 682.6 525 81.5
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 2.5e-194 682.6 517 82.2
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 3.2e-194 682.2 523 81.1
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 3.2e-194 682.2 521 81.8
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 9.3e-194 680.6 525 77.0
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.6e-193 679.9 525 80.0
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.1e-193 679.5 525 80.4
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.7e-193 679.1 525 76.6
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 3.5e-193 678.7 524 80.7
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 6.1e-193 677.9 523 81.5
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 7.9e-193 677.6 525 80.4
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 7.9e-193 677.6 525 80.8
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 7.9e-193 677.6 523 80.9
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.0e-192 677.2 524 80.9
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.0e-192 677.2 525 80.8
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.0e-192 677.2 525 81.1
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.3e-192 676.8 524 80.2
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.8e-192 676.4 525 78.7
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.3e-192 676.0 525 80.4
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 6.7e-192 674.5 525 76.2
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 6.7e-192 674.5 525 76.2
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.5e-191 673.3 525 76.0
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 4.3e-191 671.8 523 79.2
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 4.3e-191 671.8 525 81.1
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 7.4e-191 671.0 525 81.9
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 1.3e-190 670.2 525 79.0
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.6e-190 669.8 515 81.6
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 2.2e-190 669.5 525 79.6
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.8e-190 669.1 525 80.8
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 4.8e-190 668.3 525 81.0
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 2.4e-189 666.0 526 79.1
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 3.1e-189 665.6 524 77.7
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 5.3e-189 664.8 524 77.7
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 5.3e-189 664.8 524 78.1
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 6.9e-189 664.5 515 81.4
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 1.5e-188 663.3 523 81.3
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 2.0e-188 662.9 524 80.0
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 2.6e-188 662.5 524 79.8
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 4.5e-188 661.8 546 73.6
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 5.9e-188 661.4 511 79.1
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 7.7e-188 661.0 525 79.2
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 2.2e-187 659.4 523 73.6
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.2e-187 659.4 525 79.4
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 2.9e-187 659.1 525 79.4
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 2.9e-187 659.1 523 73.4
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 2.9e-187 659.1 538 69.5
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 8.5e-187 657.5 525 78.1
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 1.4e-186 656.8 523 75.7
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.9e-186 656.4 553 71.8
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 5.5e-186 654.8 523 72.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 7.2e-186 654.4 524 74.4
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.7e-185 652.5 517 78.3
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.6e-185 651.7 525 75.0
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.0e-183 646.4 525 75.6
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 2.2e-182 642.9 523 75.0
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.4e-181 640.2 523 75.0
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 2.4e-181 639.4 521 74.9
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 2.4e-181 639.4 521 74.9
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 6.9e-181 637.9 525 76.8
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 3.4e-180 635.6 518 77.6
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 1.7e-179 633.3 546 73.8
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.2e-179 632.9 525 69.1
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 1.4e-178 630.2 523 76.5
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.4e-176 623.6 568 71.0
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 5.1e-176 621.7 532 72.4
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 8.8e-176 620.9 523 69.8
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.7e-174 616.7 520 77.3
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 1.4e-173 613.6 525 74.7
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-172 609.8 496 77.2
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.1e-170 604.0 525 66.9
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.1e-165 585.9 474 81.6
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 3.1e-165 585.9 562 62.1
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 4.5e-164 582.0 478 79.9
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 8.5e-163 577.8 495 75.2
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 8.3e-158 561.2 446 80.5
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.5e-156 555.8 524 73.1
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 4.2e-154 548.9 441 82.5
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.6e-153 545.8 439 81.8
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 5.6e-138 495.4 522 64.2
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 4.4e-135 485.7 523 59.7
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 4.9e-134 482.3 415 78.6
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 5.4e-117 425.6 273 77.7
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 1.2e-113 414.5 259 81.5
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 2.1e-105 387.1 316 74.4
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 8.4e-102 375.2 331 73.4
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 3.5e-92 343.2 389 53.0
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 1.1e-88 331.6 215 80.5
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 2.4e-88 330.5 215 80.0
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 9.0e-80 302.0 370 67.0
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.8e-72 277.7 526 47.9
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.2e-69 265.8 263 74.5
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 4.2e-61 240.0 180 80.0
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 7.0e-56 222.6 135 84.4
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.2e-55 221.9 537 32.0
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.8e-40 171.4 153 61.4
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 4.7e-36 156.8 103 73.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 4.9e-33 146.7 316 38.3
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.7e-30 138.3 80 81.2
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 2.5e-29 134.4 84 78.6
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 3.3e-29 134.0 115 62.6
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 3.6e-28 130.6 138 56.5
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 8.0e-28 129.4 180 47.8
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.3e-27 127.9 70 84.3
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 4.9e-25 120.2 71 76.1
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.1e-24 119.0 301 29.9
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 9.2e-24 115.9 64 78.1
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 9.2e-24 115.9 64 78.1
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.1e-19 102.4 56 80.4
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-17 95.5 55 70.9
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 1.3e-14 85.5 57 71.9
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 2.3e-11 74.7 51 76.5
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 3.1e-11 74.3 73 52.1
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 3.1e-11 74.3 73 52.1
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.9e-11 72.8 48 83.3
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 1.5e-10 72.0 51 70.6
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 2.0e-10 71.6 33 90.9
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.4e-10 70.9 129 35.7
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 4.4e-10 70.5 106 39.6
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 2.7e-07 61.2 35 74.3
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.7e-06 58.5 134 63.4
A09p03460 Brassica napus HOM05D004386 ORTHO05D005247 3.0e-06 57.8 109 33.9
BraA09t35984Z Brassica rapa HOM05D004386 ORTHO05D005247 3.0e-06 57.8 109 33.9
AT3G27640 Arabidopsis thaliana HOM05D004386 ORTHO05D005247 6.6e-06 56.6 112 30.4
Sp2g16770 Schrenkiella parvula HOM05D004386 ORTHO05D005247 6.6e-06 56.6 99 35.4


User provided reference genes

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