Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 7.0e-47 191.0 164 100.0
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 1.6e-14 83.6 167 38.9
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.6e-14 83.6 168 38.7
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.6e-14 83.6 168 38.7
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.6e-14 83.6 167 38.9
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.7e-14 82.8 149 40.3
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.5e-14 82.4 167 38.3
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 4.6e-14 82.0 167 38.9
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.9e-12 76.6 50 74.0
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 1.2e-11 73.9 51 68.6
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-11 73.9 78 56.4
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-11 73.9 78 56.4
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-11 73.9 78 56.4
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 1.6e-11 73.6 50 68.0
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.1e-11 73.2 55 65.5
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 2.1e-11 73.2 76 55.3
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 2.8e-11 72.8 58 65.5
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 2.8e-11 72.8 76 53.9
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 3.6e-11 72.4 78 56.4
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 4.7e-11 72.0 75 58.7
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 8.1e-11 71.2 75 54.7
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 8.1e-11 71.2 78 53.8
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 8.1e-11 71.2 77 54.5
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 2.4e-10 69.7 52 65.4
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.4e-10 69.7 75 53.3
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.4e-10 69.7 75 53.3
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 3.1e-10 69.3 47 70.2
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 3.1e-10 69.3 76 51.3
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.2e-10 68.6 67 52.2
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 6.9e-10 68.2 51 66.7
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 6.9e-10 68.2 67 52.2
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 9.0e-10 67.8 52 69.2
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 9.0e-10 67.8 51 68.6
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 1.2e-09 67.4 75 52.0
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 1.2e-09 67.4 50 70.0
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 1.2e-09 67.4 49 67.3
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.0e-09 66.6 50 64.0
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 2.0e-09 66.6 44 72.7
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.0e-09 66.6 45 73.3
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.6e-09 66.2 50 66.0
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.6e-09 66.2 65 58.5
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 2.6e-09 66.2 75 48.0
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.6e-09 66.2 76 51.3
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.4e-09 65.9 75 52.0
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.4e-09 65.9 77 50.6
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.4e-09 65.5 49 67.3
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.4e-09 65.5 49 67.3
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 4.4e-09 65.5 66 53.0
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 5.8e-09 65.1 77 50.6
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 7.6e-09 64.7 76 52.6
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 7.6e-09 64.7 45 71.1
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 7.6e-09 64.7 77 50.6
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 9.9e-09 64.3 44 70.5
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 9.9e-09 64.3 76 46.1
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 9.9e-09 64.3 79 50.6
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 1.7e-08 63.5 57 56.1
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.7e-08 63.5 50 62.0
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.7e-08 63.5 77 50.6
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 2.2e-08 63.2 51 58.8
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 2.2e-08 63.2 53 62.3
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.9e-08 62.8 50 62.0
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 2.9e-08 62.8 50 62.0
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 4.9e-08 62.0 70 51.4
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.4e-08 61.2 50 62.0
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.1e-07 60.8 49 61.2
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 1.4e-07 60.5 51 60.8
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.4e-07 60.5 59 50.8
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 3.2e-07 59.3 60 53.3
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 3.2e-07 59.3 52 53.8
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 4.2e-07 58.9 44 59.1
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 4.2e-07 58.9 59 55.9
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 5.4e-07 58.5 50 60.0
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 7.1e-07 58.2 44 56.8
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 9.3e-07 57.8 53 54.7
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 9.3e-07 57.8 51 58.8
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 9.3e-07 57.8 49 59.2
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 1.2e-06 57.4 51 56.9
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 1.2e-06 57.4 51 56.9
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 1.2e-06 57.4 53 58.5
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 1.6e-06 57.0 49 59.2
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 2.7e-06 56.2 49 55.1
Nitab4.5_0002782g0020 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.7e-06 56.2 44 63.6
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.7e-06 56.2 52 57.7
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 2.7e-06 56.2 51 51.0
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 3.5e-06 55.8 44 65.9
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 3.5e-06 55.8 55 52.7
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 4.6e-06 55.5 50 52.0
CAN.G1804.7 Capsicum annuum HOM05D011491 ORTHO05D009078 7.8e-06 54.7 50 52.0
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 7.8e-06 54.7 51 49.0


User provided reference genes

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