Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1843.2 923 100.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1259.6 926 68.9
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1239.6 904 68.7
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1235.7 881 69.7
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1235.7 886 68.8
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1226.1 883 69.0
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1220.3 926 67.0
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1219.5 895 67.8
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1215.3 886 69.3
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1214.1 890 67.6
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1199.5 929 65.3
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1199.1 885 68.6
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1199.1 935 65.9
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1198.7 892 67.8
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1197.2 925 65.2
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1197.2 882 67.8
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1196.4 910 67.4
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1195.3 884 68.2
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1194.9 891 67.0
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1192.9 885 67.9
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1191.4 927 65.3
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1190.6 899 67.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1188.3 890 66.6
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1187.6 901 67.0
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1186.8 891 66.9
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1182.2 946 65.1
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1178.7 906 64.6
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1171.8 947 63.9
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1171.4 901 65.1
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1166.4 890 66.7
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1162.5 891 66.7
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1159.4 902 65.4
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 908 64.4
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1157.5 883 66.0
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1151.0 894 65.7
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1150.2 898 65.9
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1147.5 897 65.7
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1145.2 931 63.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1142.1 897 65.0
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1139.4 898 64.7
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 917 63.4
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1136.3 882 65.2
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1134.4 881 65.5
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1134.0 906 64.0
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1132.9 915 63.7
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1130.2 904 63.4
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1127.9 950 61.4
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1126.3 905 63.0
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1125.9 882 65.1
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 950 60.8
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1121.3 948 60.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1120.1 948 60.5
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1119.0 866 66.4
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 1007 59.5
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1117.8 882 64.2
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 961 60.1
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1113.6 934 61.6
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1110.9 986 59.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1105.5 1050 56.1
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 894 63.4
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1094.0 965 59.2
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1092.4 895 61.5
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 892 62.7
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 895 62.0
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1089.7 895 61.6
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 898 62.6
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 886 61.5
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1085.9 908 60.5
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1083.9 889 61.5
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1080.9 897 61.9
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 921 60.2
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 907 61.5
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 893 61.1
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1077.4 889 61.4
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1077.4 889 61.4
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1076.2 929 59.8
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 6.3e-312 1074.7 957 58.5
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.3e-311 1073.2 889 61.1
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 1.3e-311 1072.8 958 59.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.6e-310 1069.3 895 61.5
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 1.6e-310 1069.3 915 60.4
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 3.7e-310 1068.1 934 59.1
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 4.8e-310 1067.8 926 59.2
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 8.1e-310 1067.0 919 59.2
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 1.2e-308 1063.1 913 59.4
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 2.6e-308 1062.0 916 61.6
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 3.4e-308 1061.6 888 60.1
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.3e-307 1059.7 917 61.0
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 2.1e-305 1052.4 896 61.9
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 4.3e-303 1044.6 771 68.6
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 4.8e-302 1041.2 900 58.2
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 4.8e-302 1041.2 900 58.2
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 8.2e-302 1040.4 905 58.2
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 1.2e-300 1036.6 901 58.8
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 5.0e-299 1031.2 912 60.4
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.9e-298 1029.2 889 59.2
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 9.3e-298 1026.9 817 63.6
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 8.2e-294 1013.8 886 59.8
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.8e-293 1012.7 912 57.9
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 4.1e-293 1011.5 928 56.9
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 1.3e-291 1006.5 1019 52.7
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 4.2e-290 1001.5 880 57.4
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 7.2e-290 1000.7 811 63.9
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.1e-289 999.2 933 56.4
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 4.3e-287 991.5 859 60.2
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.2e-286 989.2 918 56.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.8e-286 988.8 1002 53.3
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.4e-285 986.5 919 56.6
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.0e-283 980.3 940 54.9
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 2.1e-281 972.6 1156 49.5
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 4.1e-277 958.4 814 60.7
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 5.0e-259 898.3 800 58.9
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 9.5e-258 894.0 968 51.0
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.1e-253 878.6 694 65.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.5e-247 860.1 874 53.8
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 3.4e-247 859.0 925 49.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.3e-243 846.3 917 49.7
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.2e-241 840.5 714 59.0
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.1e-237 827.4 863 50.5
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.7e-233 812.0 1098 41.8
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.9e-213 746.9 734 55.0
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 7.6e-199 698.4 686 57.3
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.1e-196 690.3 603 59.4
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 6.7e-195 685.3 626 57.3
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.1e-186 657.9 417 77.2
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.0e-171 608.2 720 49.2
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.1e-156 555.8 377 73.2
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.8e-155 554.3 413 68.5
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 2.2e-153 547.4 472 62.1
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 6.5e-150 535.8 389 69.4
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 2.8e-124 450.7 588 45.4
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.8e-124 450.7 299 72.6
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.4e-121 439.5 674 42.9
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 8.6e-118 429.1 295 70.5
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.8e-116 424.1 521 46.1
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 4.4e-114 416.8 299 67.2
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.6e-109 399.8 434 50.0
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 5.2e-99 366.7 323 57.0
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-95 355.5 276 62.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.4e-88 332.0 222 73.9
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 3.9e-54 217.6 160 68.8
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 5.0e-49 200.7 131 71.8
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.5e-49 200.3 139 64.0
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 7.0e-43 180.3 159 55.3
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.3e-38 165.2 292 41.1
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 4.2e-32 144.4 112 61.6
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.7e-28 132.5 76 82.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.2e-26 126.3 81 72.8
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.9e-24 119.0 98 58.2
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.4e-22 112.8 86 58.1
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 4.1e-19 101.3 60 73.3
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.5e-16 92.8 66 66.7
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 5.2e-14 84.3 47 83.0
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.2e-13 83.2 57 64.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.3e-12 79.7 61 65.6
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.9e-12 78.6 82 51.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 3.7e-12 78.2 160 33.1
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 7.0e-11 73.9 50 64.0
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 1.7e-09 69.3 68 47.1
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.3e-09 68.9 66 43.9
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.3e-08 64.7 62 53.2
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.2e-07 63.2 53 50.9
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.2e-07 63.2 53 50.9
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 3.6e-07 61.6 49 55.1
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 3.6e-07 61.6 43 62.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.1e-06 58.5 52 57.7


User provided reference genes

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