Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 4.2e-206 721.1 357 100.0
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 9.9e-155 550.4 348 76.1
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 8.4e-154 547.4 357 73.4
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 3.2e-153 545.4 355 73.8
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 3.2e-153 545.4 355 73.8
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 8.1e-149 530.8 356 73.0
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.3e-148 528.1 357 70.3
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.0e-148 527.3 357 69.7
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 4.9e-146 521.5 356 71.1
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 1.9e-145 519.6 352 71.6
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 5.5e-145 518.1 356 71.1
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 2.3e-143 512.7 349 71.3
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 6.7e-143 511.1 356 70.5
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 6.7e-143 511.1 348 74.1
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.6e-142 507.3 359 68.2
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 1.8e-140 503.1 345 69.6
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 1.5e-139 500.0 357 69.2
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 1.5e-139 500.0 359 68.8
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.0e-139 499.6 343 69.1
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 2.2e-138 496.1 346 70.2
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 4.9e-138 495.0 355 67.9
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 4.9e-138 495.0 349 70.5
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.1e-137 493.8 357 68.6
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 1.4e-137 493.4 346 69.9
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 5.5e-137 491.5 358 67.6
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 3.5e-136 488.8 361 68.1
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 3.5e-136 488.8 362 66.0
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 2.3e-135 486.1 384 64.1
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 2.3e-135 486.1 362 65.2
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 6.7e-135 484.6 373 65.4
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 1.5e-134 483.4 359 68.0
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 4.3e-134 481.9 351 64.4
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 7.4e-134 481.1 354 67.5
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 8.2e-133 477.6 362 64.4
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 8.2e-133 477.6 362 64.4
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 3.1e-132 475.7 361 66.5
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.0e-132 474.2 357 65.3
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 1.2e-131 473.8 347 66.6
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 2.6e-131 472.6 363 63.4
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 3.4e-131 472.2 350 66.6
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 3.4e-131 472.2 350 66.6
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 9.3e-129 464.2 361 62.6
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 6.1e-128 461.5 361 65.4
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 7.9e-128 461.1 363 62.8
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 7.9e-128 461.1 363 62.8
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 2.8e-125 452.6 353 62.6
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 4.8e-125 451.8 353 62.3
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 3.1e-124 449.1 359 61.6
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.1e-124 448.7 357 61.9
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 5.3e-124 448.4 357 63.3
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 1.5e-123 446.8 358 61.5
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 2.0e-123 446.4 358 61.2
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 4.5e-123 445.3 357 63.0
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 2.2e-122 443.0 361 60.9
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 1.9e-121 439.9 357 62.5
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 1.2e-120 437.2 351 62.7
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 1.6e-120 436.8 358 61.2
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 1.8e-119 433.3 353 61.8
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 6.7e-119 431.4 351 61.0
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 2.0e-118 429.9 366 60.7
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 2.6e-118 429.5 354 62.4
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 1.7e-117 426.8 347 61.1
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 8.2e-117 424.5 355 60.6
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 1.4e-116 423.7 351 62.4
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 2.4e-116 422.9 350 61.4
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 2.4e-116 422.9 354 59.9
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 3.1e-116 422.5 357 60.8
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 3.1e-116 422.5 357 60.8
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 9.1e-116 421.0 333 61.9
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.5e-115 420.2 374 57.8
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 2.0e-115 419.9 357 59.9
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 1.0e-114 417.5 351 60.4
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 1.0e-114 417.5 357 59.7
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 2.9e-114 416.0 329 62.9
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 5.0e-114 415.2 357 59.1
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 6.5e-114 414.8 359 59.1
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 1.1e-113 414.1 361 59.0
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 5.5e-113 411.8 355 61.7
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 1.6e-112 410.2 369 58.8
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 2.1e-112 409.8 379 57.0
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.8e-111 406.8 368 58.4
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 3.0e-111 406.0 362 56.4
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 2.6e-107 392.9 334 60.8
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 3.5e-107 392.5 333 60.1
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 7.7e-107 391.3 334 60.5
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 7.7e-107 391.3 339 59.3
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 6.5e-106 388.3 339 59.6
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 1.9e-105 386.7 364 56.9
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 2.7e-104 382.9 333 59.5
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 3.6e-104 382.5 361 55.7
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 4.0e-103 379.0 364 54.9
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 2.0e-102 376.7 347 54.5
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 6.3e-101 371.7 355 53.2
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 4.4e-94 349.0 248 67.7
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 5.4e-92 342.0 235 69.8
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 3.6e-88 329.3 228 71.1
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 9.2e-84 314.7 351 49.9
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 1.0e-79 301.2 228 66.7
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 4.0e-79 299.3 277 54.2
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 8.9e-79 298.1 352 47.2
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 7.8e-75 285.0 354 46.0
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 1.2e-70 271.2 163 76.7
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.8e-70 268.9 212 62.3
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.9e-69 265.8 212 61.3
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-68 264.6 212 60.8
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 6.0e-67 258.8 215 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 3.9e-66 256.1 372 38.4
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.2e-64 251.1 215 59.5
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 1.6e-64 250.8 315 45.7
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 4.4e-54 216.1 148 72.3
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 8.4e-53 211.8 202 55.4
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 3.9e-50 203.0 232 47.0
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.4e-47 193.7 122 74.6
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.2e-46 191.4 394 32.7
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 2.9e-45 186.8 146 61.0
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.4e-44 182.6 212 46.7
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 5.4e-36 156.0 170 45.3
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.7e-24 116.7 65 83.1
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.0e-21 108.6 65 75.4
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.1e-18 96.3 65 70.8
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 8.5e-13 79.0 76 53.9
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 1.4e-12 78.2 155 33.5
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 9.3e-12 75.5 53 67.9
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 9.3e-12 75.5 53 67.9
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 9.3e-12 75.5 53 67.9
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 1.6e-11 74.7 109 42.2
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 2.1e-11 74.3 106 41.5
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 2.7e-11 73.9 56 62.5
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 9.7e-09 65.5 57 52.6
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 4.1e-07 60.1 49 61.2
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 4.1e-07 60.1 49 61.2
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 4.1e-07 60.1 49 61.2
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 4.1e-07 60.1 49 61.2


User provided reference genes

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