Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 5.8e-175 617.8 333 100.0
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 2.3e-139 499.6 332 80.7
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.9e-138 496.5 332 80.7
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 5.7e-138 495.0 333 80.8
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 5.7e-138 495.0 331 79.5
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 1.1e-136 490.7 333 79.9
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 5.3e-136 488.4 332 79.8
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 9.0e-136 487.6 363 74.9
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 3.4e-135 485.7 337 78.6
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 4.5e-135 485.3 323 81.1
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 5.9e-135 485.0 334 79.9
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 6.5e-134 481.5 334 79.0
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 1.4e-133 480.3 324 81.8
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 4.2e-133 478.8 337 76.6
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 9.4e-133 477.6 326 79.4
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 4.6e-132 475.3 333 77.2
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 1.8e-131 473.4 331 77.0
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 1.8e-131 473.4 331 76.1
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 3.9e-131 472.2 346 75.4
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 5.1e-131 471.9 330 77.6
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 8.8e-131 471.1 342 76.6
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 8.8e-131 471.1 342 76.6
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 2.5e-130 469.5 357 75.1
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 2.2e-129 466.5 318 78.6
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 2.8e-129 466.1 342 74.3
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 2.8e-129 466.1 344 75.3
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 4.1e-128 462.2 317 76.7
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 9.1e-128 461.1 321 76.0
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.2e-127 460.7 333 77.2
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 1.2e-127 460.7 342 75.1
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 4.5e-127 458.8 333 77.2
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 5.9e-127 458.4 330 75.8
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 7.7e-127 458.0 347 73.2
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.3e-126 457.2 338 75.1
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 1.3e-126 457.2 347 74.4
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 2.2e-126 456.4 332 75.6
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 2.2e-126 456.4 345 72.5
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.2e-126 456.4 338 75.1
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 5.0e-126 455.3 346 75.1
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.5e-126 454.9 336 75.3
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 2.5e-125 453.0 342 75.4
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 5.5e-125 451.8 282 82.6
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 9.4e-125 451.1 351 72.1
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 1.6e-124 450.3 358 72.6
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 2.1e-124 449.9 348 74.7
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.4e-123 447.2 288 83.3
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.4e-123 447.2 288 83.3
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 1.8e-123 446.8 325 73.8
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 2.3e-123 446.4 340 73.8
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 3.9e-123 445.7 329 74.2
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 6.7e-123 444.9 330 75.8
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 8.8e-123 444.5 330 73.6
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 2.0e-122 443.4 349 71.1
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 3.3e-122 442.6 334 71.6
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 3.3e-122 442.6 263 87.1
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 4.4e-122 442.2 334 72.2
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 7.4e-122 441.4 287 80.1
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 1.3e-121 440.7 327 72.8
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 1.7e-121 440.3 334 74.3
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 2.8e-121 439.5 335 71.9
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 4.8e-121 438.7 298 77.2
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 8.2e-121 438.0 333 73.6
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 1.1e-120 437.6 336 71.7
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 1.4e-120 437.2 331 71.0
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 1.8e-120 436.8 346 69.4
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 1.8e-120 436.8 341 71.0
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 2.4e-120 436.4 344 71.2
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 5.3e-120 435.3 335 69.9
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 1.2e-119 434.1 375 67.2
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.5e-119 433.7 348 71.6
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 1.5e-119 433.7 345 69.3
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 2.0e-119 433.3 347 73.2
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 2.0e-119 433.3 334 74.3
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 2.0e-119 433.3 329 72.3
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 2.6e-119 433.0 273 82.4
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 3.5e-119 432.6 339 70.5
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 3.5e-119 432.6 263 85.2
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 5.9e-119 431.8 337 70.6
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 7.7e-119 431.4 338 70.4
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 1.7e-118 430.3 339 70.2
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 3.8e-118 429.1 345 68.7
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 4.2e-117 425.6 338 69.2
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 1.6e-116 423.7 341 68.9
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 2.7e-116 422.9 319 74.3
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 1.1e-114 417.5 332 69.9
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 2.2e-113 413.3 323 69.3
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 1.4e-112 410.6 388 62.1
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 1.2e-111 407.5 363 66.7
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 5.9e-111 405.2 284 73.9
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 5.9e-111 405.2 336 68.5
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 1.9e-109 400.2 325 71.7
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 2.5e-109 399.8 333 68.2
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.1e-108 396.7 296 73.3
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 3.6e-108 396.0 285 75.1
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.6e-106 389.8 296 73.3
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 5.7e-106 388.7 309 71.2
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 1.2e-103 380.9 241 81.3
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 1.2e-103 380.9 241 80.1
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 1.7e-94 350.5 268 65.7
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 3.8e-94 349.4 269 65.8
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-93 347.8 227 81.9
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 7.2e-93 345.1 293 63.8
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 2.1e-92 343.6 294 62.2
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 3.7e-89 332.8 269 63.9
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 8.3e-89 331.6 272 62.5
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.4e-88 330.9 309 58.6
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.4e-88 330.9 309 58.6
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 4.5e-87 325.9 255 70.2
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 8.6e-86 321.6 264 66.7
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 2.5e-85 320.1 330 56.7
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 1.2e-79 301.2 265 57.4
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 5.0e-78 295.8 265 57.4
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 9.5e-77 291.6 343 54.5
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.2e-74 284.6 220 71.8
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 2.6e-74 283.5 341 49.3
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.1e-69 268.1 215 68.4
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.1e-69 268.1 170 85.3
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.6e-68 264.2 292 57.2
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.7e-55 220.3 222 56.8
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.8e-50 202.6 169 67.5
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.2e-42 178.3 175 61.7
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-32 145.2 111 74.8
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.5e-26 124.8 102 56.9
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 7.6e-26 122.5 93 64.5
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 1.6e-20 104.8 103 64.1
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 4.1e-19 100.1 115 47.0
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 1.5e-18 98.2 255 29.8
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 6.1e-15 86.3 62 64.5
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 1.4e-06 58.5 38 71.1


User provided reference genes

Program Settings