Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 6.1e-166 587.4 299 100.0
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.8e-104 383.3 308 63.6
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 8.7e-104 380.9 308 63.0
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 4.8e-102 375.2 266 69.5
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.8e-101 373.2 292 64.4
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.0e-96 357.5 279 64.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 3.0e-96 355.9 276 62.3
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 8.7e-96 354.4 273 64.8
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.9e-95 353.2 290 62.1
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 3.7e-94 349.0 271 62.0
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 6.3e-94 348.2 275 62.9
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 6.3e-94 348.2 264 65.9
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.4e-93 347.1 277 62.5
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 2.4e-93 346.3 266 66.5
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.4e-93 346.3 266 65.8
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 3.1e-93 345.9 289 60.2
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.3e-93 345.1 268 64.2
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.9e-93 344.7 266 66.5
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 4.5e-92 342.0 284 59.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 4.5e-92 342.0 273 63.7
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 7.7e-92 341.3 268 64.2
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.0e-91 340.9 294 57.8
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.3e-91 340.5 275 62.5
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.2e-91 339.7 274 60.6
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 3.8e-91 339.0 286 60.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.9e-90 336.7 284 58.8
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 3.2e-90 335.9 268 60.8
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 7.2e-90 334.7 281 61.6
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 9.4e-90 334.3 272 62.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.2e-89 334.0 282 57.8
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.2e-89 334.0 268 60.4
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.7e-89 332.8 276 57.6
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 3.6e-89 332.4 289 59.2
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 4.6e-89 332.0 276 59.1
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 4.6e-89 332.0 271 62.0
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.0e-88 330.9 276 57.6
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.9e-88 328.9 297 56.9
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 3.9e-88 328.9 267 58.4
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 5.1e-88 328.6 286 59.1
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 8.8e-88 327.8 276 58.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 8.8e-88 327.8 281 58.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 8.8e-88 327.8 302 53.6
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 1.1e-87 327.4 285 57.5
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.5e-87 327.0 319 54.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-87 326.6 271 61.3
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-87 326.6 271 61.3
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.9e-87 326.6 265 59.6
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.5e-87 326.2 265 59.6
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 3.3e-87 325.9 275 57.5
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 3.3e-87 325.9 265 59.2
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 2.2e-86 323.2 262 61.8
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 3.7e-86 322.4 264 58.7
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 4.8e-86 322.0 267 59.9
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.1e-85 320.9 269 59.1
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.1e-85 320.9 279 59.9
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.4e-85 320.5 270 58.5
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.4e-85 320.5 271 58.7
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.8e-85 320.1 262 61.5
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.4e-85 319.7 270 57.4
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 2.4e-85 319.7 272 56.2
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.4e-85 319.7 289 57.4
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 4.1e-85 318.9 263 59.7
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 6.9e-85 318.2 269 58.7
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.5e-84 317.0 278 57.2
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.0e-84 316.6 271 58.7
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.5e-84 315.5 265 58.1
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 5.9e-84 315.1 273 56.8
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.7e-83 313.5 270 57.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.9e-83 312.8 279 55.6
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.4e-82 310.5 275 55.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.9e-82 310.1 279 53.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.2e-82 309.3 273 56.4
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 7.2e-82 308.1 265 57.4
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 9.4e-82 307.8 269 56.9
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.6e-81 307.0 309 52.4
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.7e-81 306.2 288 53.1
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 2.7e-81 306.2 272 56.2
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 7.9e-81 304.7 275 53.5
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.0e-80 304.3 272 55.1
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.0e-80 304.3 265 55.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 3.0e-80 302.8 274 54.0
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 3.0e-80 302.8 275 53.8
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 5.1e-80 302.0 268 55.2
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 8.8e-80 301.2 280 53.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 5.7e-79 298.5 274 54.0
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 7.4e-79 298.1 272 54.8
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 7.4e-79 298.1 265 55.5
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.7e-78 297.0 276 52.9
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.7e-78 295.8 275 52.4
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.8e-78 295.4 276 52.9
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 6.3e-78 295.0 273 56.4
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 8.2e-78 294.7 274 54.7
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.4e-77 293.9 276 52.5
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 5.3e-77 292.0 265 55.1
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.3e-75 287.3 196 70.4
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.7e-75 287.0 314 48.4
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 3.6e-73 279.3 265 51.7
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 3.6e-73 279.3 281 50.2
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 4.7e-73 278.9 270 52.2
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.0e-72 277.7 273 49.8
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.2e-72 275.4 265 51.7
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 4.4e-71 272.3 270 51.1
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.4e-71 272.3 268 49.3
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.7e-70 270.4 270 50.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 4.8e-70 268.9 267 52.1
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.4e-69 267.3 266 48.1
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.6e-68 263.8 283 48.1
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.7e-67 260.4 256 52.0
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.2e-67 260.0 264 46.2
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 5.0e-67 258.8 264 47.0
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 6.5e-67 258.5 297 48.1
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 3.6e-65 252.7 267 46.1
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.8e-64 250.4 264 44.7
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.5e-63 247.3 270 44.1
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.0e-63 246.9 265 48.7
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.4e-63 245.7 260 46.2
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 9.7e-63 244.6 202 57.4
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 3.7e-62 242.7 282 47.9
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.8e-61 240.4 292 44.2
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 5.3e-61 238.8 196 60.2
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.2e-59 233.4 205 58.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.2e-59 233.4 205 58.0
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.8e-59 232.6 232 49.6
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.2e-58 229.6 260 44.6
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 3.6e-57 226.1 240 46.2
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.4e-55 219.2 266 43.2
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.7e-54 217.2 170 62.4
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.1e-53 211.5 285 39.6
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.5e-47 194.1 280 38.6
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 2.0e-47 193.7 273 37.0
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.4e-45 187.6 263 37.3
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.0e-45 185.3 173 53.2
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 4.7e-41 172.6 176 48.3
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.8e-40 168.7 272 35.3
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 7.5e-39 165.2 261 36.4
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.4e-37 159.1 267 33.0
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.3e-32 143.7 204 37.3
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.9e-26 124.0 98 60.2
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.6e-20 102.8 125 40.8
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.1e-19 99.4 199 31.2
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-18 97.8 66 69.7
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-18 97.8 66 69.7
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 1.4e-16 91.3 70 61.4
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 8.9e-16 88.6 98 44.9
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 8.4e-14 82.0 95 46.3
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.2e-13 80.1 133 34.6
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 8.1e-09 65.5 255 23.5
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.8e-08 64.3 171 28.1
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 3.1e-08 63.5 189 28.0


User provided reference genes

Program Settings