Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 1.3e-83 313.2 171 100.0
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.7e-43 179.9 105 82.9
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.7e-43 179.9 150 64.7
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 6.4e-43 177.9 108 79.6
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 8.4e-43 177.6 107 81.3
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.9e-42 176.4 121 72.7
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 3.2e-42 175.6 107 82.2
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 4.2e-42 175.3 121 72.7
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 5.4e-42 174.9 121 74.4
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 5.4e-42 174.9 121 74.4
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 5.4e-42 174.9 121 74.4
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 7.1e-42 174.5 119 73.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 9.3e-42 174.1 116 75.0
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 9.3e-42 174.1 150 64.7
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.2e-41 173.7 135 69.6
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.6e-41 173.3 136 64.7
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.1e-41 172.9 121 73.6
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.1e-41 172.9 105 81.0
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 2.7e-41 172.6 104 81.7
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.7e-41 172.6 107 77.6
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 3.5e-41 172.2 113 75.2
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 3.5e-41 172.2 103 80.6
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 4.6e-41 171.8 104 79.8
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 6.0e-41 171.4 104 81.7
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.0e-40 170.6 103 79.6
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.7e-40 169.9 108 73.1
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 2.3e-40 169.5 108 72.2
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 3.0e-40 169.1 103 79.6
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 3.9e-40 168.7 108 73.1
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 3.9e-40 168.7 105 76.2
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 3.9e-40 168.7 150 62.0
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 5.1e-40 168.3 105 80.0
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 6.6e-40 167.9 145 63.4
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 8.7e-40 167.5 108 73.1
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.7e-40 167.5 101 81.2
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 8.7e-40 167.5 103 79.6
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.1e-39 167.2 118 72.9
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.5e-39 166.8 103 79.6
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.5e-39 166.8 110 76.4
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.9e-39 166.4 110 75.5
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 2.5e-39 166.0 105 78.1
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 3.3e-39 165.6 118 72.0
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 3.3e-39 165.6 110 75.5
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 4.3e-39 165.2 101 80.2
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 5.6e-39 164.9 101 80.2
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 9.6e-39 164.1 117 71.8
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 9.6e-39 164.1 101 80.2
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 9.6e-39 164.1 101 80.2
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.6e-38 163.3 101 80.2
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.6e-38 163.3 101 80.2
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.8e-38 162.5 117 70.9
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.8e-38 162.5 125 68.0
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 3.6e-38 162.2 114 71.1
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 4.8e-38 161.8 113 73.5
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 4.8e-38 161.8 103 78.6
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 4.8e-38 161.8 114 71.9
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 6.2e-38 161.4 95 83.2
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.8e-37 159.8 101 77.2
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 1.8e-37 159.8 101 76.2
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.8e-37 159.8 112 71.4
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.4e-37 159.5 103 76.7
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.1e-37 159.1 118 70.3
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.1e-37 159.1 103 75.7
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 3.1e-37 159.1 116 70.7
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 4.0e-37 158.7 157 56.1
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 5.3e-37 158.3 103 75.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 5.3e-37 158.3 103 76.7
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 5.3e-37 158.3 142 64.8
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 5.3e-37 158.3 145 62.8
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 5.3e-37 158.3 113 71.7
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 6.9e-37 157.9 100 78.0
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 6.9e-37 157.9 100 80.0
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.2e-36 157.1 100 76.0
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 1.2e-36 157.1 103 75.7
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.2e-36 157.1 103 74.8
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.5e-36 156.8 103 74.8
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.0e-36 156.4 100 76.0
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.0e-36 156.4 100 76.0
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 4.4e-36 155.2 100 75.0
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 4.4e-36 155.2 100 75.0
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 4.4e-36 155.2 102 71.6
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 4.4e-36 155.2 144 61.1
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 9.9e-36 154.1 101 71.3
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 9.9e-36 154.1 107 72.0
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 9.9e-36 154.1 99 72.7
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-35 153.7 101 77.2
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.3e-35 153.7 101 77.2
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.3e-35 153.7 101 77.2
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.7e-35 153.3 101 71.3
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.2e-35 152.9 114 65.8
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 2.2e-35 152.9 112 70.5
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.2e-35 152.9 144 56.9
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.8e-35 152.1 103 74.8
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 4.9e-35 151.8 101 76.2
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 4.9e-35 151.8 101 76.2
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.9e-35 151.8 101 75.2
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 2.4e-34 149.4 103 75.7
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 2.4e-34 149.4 146 54.1
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 4.2e-34 148.7 103 73.8
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 5.4e-34 148.3 143 56.6
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.4e-34 148.3 103 71.8
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 9.3e-34 147.5 109 70.6
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.1e-33 146.4 103 72.8
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 2.1e-33 146.4 98 73.5
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.5e-33 145.6 102 73.5
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.0e-32 144.1 98 72.4
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.0e-32 144.1 95 73.7
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 3.0e-32 142.5 98 72.4
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 6.6e-32 141.4 108 65.7
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 6.6e-32 141.4 108 67.6
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 3.3e-31 139.0 110 63.6
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 9.6e-31 137.5 108 62.0
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.4e-29 133.7 104 71.2
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.8e-29 133.3 96 68.8
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 5.8e-28 128.3 83 75.9
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.9e-26 123.2 81 72.8
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 3.2e-26 122.5 72 86.1
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.2e-25 120.6 96 60.4
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.5e-25 119.0 110 50.9
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 6.7e-24 114.8 112 52.7
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 4.8e-22 108.6 70 75.7
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 2.6e-20 102.8 137 48.2
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.1e-17 93.2 71 67.6
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 3.3e-15 85.9 58 69.0
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 4.3e-15 85.5 61 70.5
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 4.3e-15 85.5 85 60.0
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.4e-13 80.5 99 39.4
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 6.9e-13 78.2 99 42.4
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 6.9e-13 78.2 49 79.6
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.2e-12 77.4 108 47.2
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 1.7e-11 73.6 47 78.7
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 7.1e-10 68.2 53 56.6
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.2e-09 67.4 49 71.4
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.2e-09 67.4 49 71.4
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 1.2e-09 67.4 104 34.6
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 1.9e-07 60.1 37 78.4
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 3.7e-06 55.8 39 76.9
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 6.3e-06 55.1 30 93.3


User provided reference genes

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