Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 2.3e-213 745.3 395 100.0
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 1.4e-120 437.2 376 66.5
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.4e-120 437.2 382 66.8
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 1.5e-119 433.7 387 66.4
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.7e-118 430.3 381 66.4
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.4e-117 427.2 380 66.1
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.8e-117 426.8 379 65.4
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 3.1e-117 426.0 383 66.6
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 5.3e-117 425.2 382 64.4
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.0e-117 424.9 381 65.1
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 7.0e-117 424.9 381 65.1
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 9.1e-117 424.5 384 64.8
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.2e-116 424.1 380 65.0
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 2.0e-116 423.3 381 65.6
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 2.6e-116 422.9 383 64.5
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 7.7e-116 421.4 382 64.4
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.7e-115 420.2 378 63.5
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.7e-113 412.9 379 63.6
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.4e-112 410.6 380 63.7
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 3.9e-112 409.1 385 63.1
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.9e-112 409.1 370 64.3
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 2.0e-111 406.8 385 62.9
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 5.7e-111 405.2 393 62.1
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 1.7e-110 403.7 382 63.1
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.7e-110 403.7 382 61.5
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 8.2e-110 401.4 374 62.0
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 2.4e-109 399.8 385 61.8
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 5.3e-109 398.7 383 62.7
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 9.1e-109 397.9 375 61.9
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 1.2e-108 397.5 383 61.6
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 1.0e-107 394.4 380 61.6
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.9e-107 392.9 373 62.2
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 2.9e-107 392.9 383 59.8
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 5.0e-107 392.1 385 59.7
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 5.0e-107 392.1 428 57.0
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.9e-106 390.2 370 63.2
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.9e-106 390.2 381 60.4
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.2e-106 389.0 404 58.2
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 7.2e-106 388.3 378 60.6
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 9.4e-106 387.9 390 60.0
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.1e-105 386.7 381 61.7
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.7e-105 386.3 381 60.4
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.7e-105 385.6 419 56.1
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.0e-104 384.4 411 56.9
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 1.4e-104 384.0 383 59.8
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.8e-104 383.6 419 55.8
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 4.0e-104 382.5 396 57.3
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 5.2e-104 382.1 387 59.4
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 5.2e-104 382.1 384 59.9
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 5.2e-104 382.1 381 60.6
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 6.7e-104 381.7 378 61.1
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-103 380.6 381 58.5
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 5.7e-103 378.6 401 58.9
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 2.2e-102 376.7 380 60.8
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 6.3e-102 375.2 373 59.5
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 8.2e-102 374.8 380 60.0
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-101 374.4 383 59.0
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 4.1e-101 372.5 386 59.3
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 5.3e-101 372.1 383 58.2
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.3e-101 372.1 421 55.1
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 9.1e-101 371.3 368 59.5
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 2.0e-100 370.2 385 59.0
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.9e-100 368.6 383 57.4
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 7.7e-100 368.2 382 57.9
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.3e-99 367.5 370 58.9
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 3.8e-99 365.9 373 57.6
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 8.5e-99 364.8 379 58.0
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.5e-98 363.2 388 57.7
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 3.6e-97 359.4 391 56.3
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.1e-97 358.6 327 66.1
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.0e-96 357.8 408 54.7
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 5.2e-96 355.5 384 53.4
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 3.4e-95 352.8 311 66.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.4e-95 352.8 358 57.3
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.7e-94 350.5 326 63.8
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.1e-93 344.7 356 59.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.6e-92 344.0 385 52.5
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.8e-91 339.3 381 56.4
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.1e-90 337.8 393 55.0
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 3.3e-90 336.3 375 53.9
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.6e-89 334.0 369 55.6
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 3.6e-89 332.8 371 53.4
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 6.1e-89 332.0 330 59.4
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 4.0e-88 329.3 371 53.4
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 5.2e-88 328.9 370 53.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 6.8e-88 328.6 374 57.0
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 2.6e-87 326.6 370 52.2
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 2.6e-87 326.6 372 52.4
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 4.4e-87 325.9 376 53.2
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 7.5e-87 325.1 357 53.2
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.3e-86 324.3 370 53.2
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.2e-86 323.6 470 46.4
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.8e-86 323.2 472 46.6
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 4.9e-86 322.4 370 51.9
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 8.3e-86 321.6 384 52.6
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.7e-83 313.9 371 51.2
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 6.6e-83 312.0 359 54.3
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 8.6e-83 311.6 382 53.7
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.1e-82 311.2 372 51.9
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 5.6e-82 308.9 374 51.3
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 5.6e-82 308.9 411 49.1
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.1e-81 307.0 370 49.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.1e-81 307.0 379 52.2
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.8e-80 303.9 372 51.3
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.9e-78 296.6 400 45.5
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 7.0e-77 292.0 380 48.7
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.3e-75 287.7 392 47.7
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.5e-66 256.9 329 52.0
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 4.3e-66 256.1 248 64.5
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 4.7e-65 252.7 305 52.1
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 2.3e-64 250.4 318 53.1
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 5.1e-59 232.6 240 57.1
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 4.0e-56 223.0 226 57.5
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.9e-53 214.2 334 47.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 3.5e-52 209.9 299 46.5
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.0e-51 206.8 293 49.8
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 9.0e-48 195.3 291 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 5.1e-43 179.5 420 33.6
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 8.7e-43 178.7 415 34.9
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 6.2e-33 146.0 152 52.6
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 6.2e-33 146.0 152 52.6
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 1.0e-27 128.6 129 52.7
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.0e-27 128.6 162 50.0
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.3e-26 123.6 341 32.0
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 9.0e-24 115.5 98 75.5
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 7.6e-23 112.5 142 47.9
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.5e-20 103.6 71 85.9
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.9e-19 100.1 140 45.7
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.8e-17 93.2 64 70.3
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.9e-15 86.3 168 41.7
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 7.2e-13 79.3 118 43.2
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 3.6e-12 77.0 264 29.9
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 6.1e-12 76.3 65 64.6
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.1e-10 72.0 103 43.7
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 5.7e-10 69.7 71 56.3
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-07 62.0 81 50.6
MELO3C030860.2 Cucumis melo HOM05D005133 ORTHO05D006685 3.8e-06 57.0 47 70.2


User provided reference genes

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