Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1761.9 871 100.0
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1305.4 879 75.3
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1297.3 926 73.0
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1296.2 875 75.9
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1283.1 895 73.6
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1283.1 881 74.6
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1279.6 913 71.7
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1275.8 872 74.4
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1270.4 864 75.1
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1269.6 890 74.2
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1267.3 882 73.9
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1265.8 882 73.9
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1262.7 882 73.5
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1259.2 880 74.9
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1258.0 899 72.5
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1255.4 883 73.7
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1247.6 877 72.7
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1245.3 888 72.6
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1244.6 967 67.4
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1241.1 909 70.7
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1238.4 878 72.6
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1237.6 884 72.5
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1237.2 894 71.9
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1235.7 901 71.7
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1231.1 883 72.0
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1228.0 906 71.6
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1226.8 889 71.9
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1226.1 888 71.4
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1223.8 904 70.4
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1222.6 882 71.5
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1221.8 879 70.9
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1219.5 879 71.4
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1218.8 891 70.6
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1216.4 883 71.7
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1215.7 879 71.3
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1215.3 881 70.0
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1214.9 883 70.7
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1213.7 879 70.6
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1211.8 881 71.9
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1210.7 911 68.7
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1210.3 905 70.1
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1208.4 887 70.8
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1206.8 875 71.7
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1205.7 888 70.3
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1204.5 871 70.8
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1203.3 889 71.0
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1203.0 905 69.6
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1202.2 911 68.6
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1202.2 905 69.3
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1202.2 864 71.2
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1199.9 885 70.5
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1196.4 906 68.7
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1194.9 876 71.1
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1194.1 928 67.9
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1192.9 887 69.1
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1188.7 929 67.7
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1186.8 883 69.4
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1184.9 882 69.7
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1183.3 879 69.6
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1178.3 953 65.2
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1176.4 893 68.5
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1176.4 884 68.9
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1174.8 898 67.8
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1174.8 887 68.3
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1174.5 888 69.7
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 894 68.1
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1167.9 882 68.5
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1167.1 882 68.9
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1166.8 882 68.5
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1161.0 884 68.1
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1157.1 881 69.4
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1157.1 896 69.0
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1156.0 883 68.3
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1156.0 876 69.9
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1153.7 886 67.0
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1153.3 885 67.6
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1153.3 887 67.2
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1148.7 916 66.2
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1146.7 883 67.6
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1146.0 875 67.1
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 896 66.9
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1142.5 885 67.7
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1142.5 916 65.7
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1141.7 882 67.9
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 916 65.5
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1134.8 875 69.8
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1131.3 886 66.9
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 870 67.1
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1130.2 870 67.2
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1129.8 880 68.6
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1127.5 885 67.2
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1125.9 724 77.8
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1125.9 884 67.3
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1124.8 879 65.6
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1123.2 883 66.4
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1120.9 892 65.4
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1117.8 909 64.2
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1115.5 874 66.6
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1113.6 900 65.9
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1110.1 891 65.0
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1106.7 891 64.9
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1105.9 895 65.3
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1103.6 883 66.0
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1102.4 883 65.3
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1102.0 894 65.3
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1095.5 879 66.2
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1095.1 882 65.8
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1081.6 898 63.7
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1081.2 910 61.1
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 6.0e-312 1074.7 880 64.4
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 6.0e-312 1074.3 889 63.9
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 6.0e-312 1073.9 829 67.1
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 4.2e-311 1071.2 880 64.2
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 8.9e-311 1070.1 964 58.9
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 1.1e-308 1063.1 797 68.5
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 2.5e-308 1062.0 910 63.3
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 3.6e-307 1058.1 927 62.5
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 3.0e-306 1055.0 869 64.3
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.8e-304 1048.5 899 61.2
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 2.1e-299 1032.3 861 64.6
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.5e-292 1009.6 660 77.4
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 3.6e-291 1005.0 862 62.4
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 4.0e-290 1001.5 868 61.5
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 5.7e-289 997.7 888 61.1
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 5.7e-281 971.1 590 80.2
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 6.3e-280 967.6 959 56.2
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 2.4e-279 965.7 842 63.3
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.1e-279 965.3 918 56.9
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.3e-276 954.9 919 56.4
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.3e-266 922.5 895 56.5
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.2e-265 920.2 838 58.4
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 6.6e-261 904.4 882 54.1
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.8e-259 899.0 882 55.0
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 8.9e-258 894.0 912 55.6
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.3e-253 880.2 924 52.8
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 3.3e-252 875.5 689 62.4
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.2e-251 873.6 848 56.0
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 6.4e-248 861.3 867 54.4
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 2.6e-241 839.3 845 54.4
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.7e-240 836.6 805 55.3
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.4e-231 806.2 605 66.0
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 9.0e-226 787.7 582 71.3
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.6e-214 750.4 850 46.6
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 2.7e-214 749.6 574 63.8
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.0e-205 721.1 852 45.9
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.8e-203 713.0 868 45.5
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 2.6e-196 689.9 623 60.0
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.3e-192 677.6 623 58.9
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 9.1e-186 654.8 613 52.7
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 2.0e-177 627.1 576 58.0
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.4e-172 609.4 897 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.3e-141 507.3 568 46.8
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 8.1e-134 482.3 526 52.9
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.2e-130 470.3 447 56.6
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 4.8e-118 429.9 573 40.5
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.3e-115 421.8 496 47.6
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 3.4e-108 397.1 401 56.9
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.3e-104 385.2 484 46.5
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 7.6e-100 369.4 264 67.0
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 2.8e-94 350.9 700 32.3
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.3e-86 325.5 225 68.4
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 6.5e-83 313.2 264 60.2
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 8.0e-73 279.6 175 73.7
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.2e-68 265.8 520 31.0
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.7e-60 238.0 157 73.2
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 3.5e-60 237.7 504 29.6
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 9.2e-37 159.8 197 51.3
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 8.9e-32 143.3 222 43.2
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.9e-21 109.0 74 73.0
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 4.6e-20 104.4 364 28.0
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.9e-18 99.0 78 61.5
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.7e-17 94.4 123 48.0
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 7.1e-13 80.5 173 33.5
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 2.1e-12 79.0 74 59.5


User provided reference genes

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