Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1689.9 838 100.0
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1436.8 838 83.7
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1434.1 838 83.3
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1430.6 839 83.0
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1422.1 838 83.3
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1421.0 838 82.7
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1419.8 837 83.3
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1419.4 840 83.3
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1406.7 838 82.5
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1402.5 868 80.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1402.5 838 81.7
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1394.4 840 81.5
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1393.3 838 81.9
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1390.9 838 81.7
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1388.6 838 80.9
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1382.9 838 81.1
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1382.5 840 81.1
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1381.7 839 80.9
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1380.2 838 81.3
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1379.8 838 81.4
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1379.4 838 80.3
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1379.0 839 80.1
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1378.6 838 81.3
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1378.6 838 81.5
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1377.5 838 80.9
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1377.5 838 80.9
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1376.7 838 81.3
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1375.9 858 79.5
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1372.5 838 81.3
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1367.1 838 80.4
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1366.7 838 80.9
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1366.3 839 80.1
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1365.9 839 80.5
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1364.4 838 79.8
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1361.7 826 80.8
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1360.1 838 79.8
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1359.0 838 79.0
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1357.4 838 80.0
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1354.0 844 79.9
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1352.8 838 79.2
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1352.4 830 80.2
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1351.3 839 79.7
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1350.9 839 79.3
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1350.5 838 79.4
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1348.6 838 78.8
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 839 79.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 838 78.9
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 838 78.9
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1342.0 845 78.9
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1342.0 838 78.8
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 915 74.5
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1340.1 839 78.9
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1339.7 870 77.2
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1339.7 838 78.5
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 838 78.6
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 845 78.8
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 838 79.0
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1338.6 838 78.8
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1337.4 845 78.7
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 838 78.0
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 839 78.8
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 838 77.2
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 838 79.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 841 77.6
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1333.5 838 79.0
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1329.3 845 78.0
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1328.2 839 78.1
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 904 74.2
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 843 77.2
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1324.3 840 77.6
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1323.1 838 77.1
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 851 77.9
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1322.0 967 70.3
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1316.6 911 73.7
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1316.6 838 77.9
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1314.3 911 73.0
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1312.4 858 76.6
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1291.2 838 77.3
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1282.3 826 77.0
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 825 77.5
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1275.8 819 77.8
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1272.7 781 79.9
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1268.4 869 73.4
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1266.5 764 80.5
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1263.4 838 75.3
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1255.0 751 81.4
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1246.1 766 80.2
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1245.7 842 74.6
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1242.6 765 79.2
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1240.7 776 79.4
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1226.5 788 76.3
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1222.6 839 74.0
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1218.4 842 73.6
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1193.7 858 69.1
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1192.6 805 72.0
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1180.2 839 69.4
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1156.4 748 75.7
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1154.0 844 67.8
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 693 81.1
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 697 80.2
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1150.2 838 70.8
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1138.6 839 68.9
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1114.0 852 65.0
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1090.1 850 64.8
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 0.0e+00 1076.2 655 81.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 4.8e-309 1064.3 840 63.7
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.7e-282 976.1 845 63.6
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 3.2e-260 902.1 642 71.8
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 3.3e-241 839.0 542 74.0
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 4.3e-225 785.4 513 74.5
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 3.9e-210 735.7 418 85.9
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 7.7e-158 562.0 329 83.3
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 3.6e-123 446.8 300 78.0
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.4e-114 418.3 307 67.4
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.6e-113 414.1 254 80.3
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 7.8e-110 402.5 285 69.8
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.8e-98 364.8 194 91.2
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 2.2e-88 331.3 263 65.0
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 2.7e-86 324.3 388 49.5
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 8.8e-69 266.2 275 54.5
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.7e-67 261.9 182 73.6
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.1e-54 216.9 138 79.0
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-46 192.6 139 69.8
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 4.4e-44 184.1 117 76.9
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 5.7e-36 157.1 83 88.0
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 4.9e-35 154.1 174 49.4
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 6.3e-35 153.7 94 78.7
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 2.8e-30 138.3 82 84.1
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.1e-26 126.3 76 77.6
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 7.8e-25 120.2 85 67.1
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 6.6e-24 117.1 74 78.4
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.2e-22 112.8 84 65.5
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 4.0e-21 107.8 67 76.1
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 4.9e-19 100.9 68 72.1
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 7.3e-15 87.0 105 52.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-09 69.7 42 83.3
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 2.3e-08 65.5 50 62.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 6.2e-06 57.4 41 65.9


User provided reference genes

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