Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 3671.3 1906 100.0
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 3166.7 1912 87.2
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 3085.0 1912 85.4
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 2889.8 1934 78.6
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 2873.6 1940 80.1
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 2843.5 1892 81.1
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 2118.6 1924 63.7
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1900.9 1779 57.1
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1900.2 1920 54.5
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1888.6 1848 55.8
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1881.7 1981 54.1
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1877.1 1871 54.9
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1864.0 1982 52.5
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1855.1 1919 53.9
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1847.8 1859 54.7
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1845.9 1983 52.7
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1840.5 1980 52.3
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1839.7 1983 52.3
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1835.8 1541 61.1
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1823.9 1869 53.6
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1820.4 1984 52.8
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1815.8 1537 60.6
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1813.1 1621 59.0
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1812.7 1850 53.5
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1805.4 1941 52.4
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1800.8 1852 53.7
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1797.3 1949 53.2
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1795.8 1962 51.9
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1792.3 1885 52.9
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1791.5 1978 51.6
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1782.7 1924 51.7
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1776.9 1862 53.3
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1776.5 1837 53.2
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1762.3 1930 52.1
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1759.2 1878 52.4
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1758.8 1879 52.3
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1756.9 1882 52.3
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1753.8 1923 51.6
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1740.3 1870 52.5
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1739.2 1841 52.5
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1735.3 1888 51.8
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1733.8 1921 50.3
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1730.7 2008 49.6
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1725.3 1928 51.0
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1723.8 1930 50.9
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1717.2 1876 51.4
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1715.7 1853 51.7
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1707.2 1863 51.6
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1704.9 1884 51.4
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1703.0 1887 50.9
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1701.8 1850 51.9
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1700.3 1935 50.3
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1698.7 1883 50.7
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1697.9 1855 50.8
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1694.9 1934 49.7
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1693.7 1912 50.8
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1690.2 1862 51.5
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1690.2 1972 49.4
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1684.1 1921 50.3
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1683.3 1930 50.4
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1681.8 1869 51.2
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1677.9 1879 50.9
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1669.1 1937 50.9
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1659.8 1990 49.2
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1657.1 1865 50.0
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1653.3 1809 51.9
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1653.3 1809 51.9
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1645.2 1931 49.1
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1643.6 1935 48.7
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1637.9 1881 49.4
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1632.5 1845 50.0
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1628.2 1874 49.4
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1623.6 1867 49.5
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1622.8 1848 49.5
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1621.7 1624 53.8
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1620.1 1847 49.3
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1617.4 1895 49.6
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1616.3 1865 49.1
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1614.0 1850 49.1
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1609.0 1293 62.5
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1608.2 1863 49.1
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1607.8 1885 48.9
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1604.7 1746 50.5
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1603.6 1470 57.2
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1602.0 1842 49.3
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1599.3 1842 48.6
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1599.3 1911 48.5
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1583.5 1911 48.4
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1580.5 1917 48.8
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1577.8 1910 48.3
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1576.6 2038 46.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1576.6 1860 49.0
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1556.6 1649 51.2
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1538.9 1909 46.7
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1525.4 1581 54.5
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1517.3 1864 47.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1493.4 1992 45.0
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1440.6 1243 59.6
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1397.1 1474 50.5
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1378.2 801 90.5
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1363.6 1880 42.7
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1268.8 1159 62.9
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1144.0 1217 52.8
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 1.4e-308 1063.9 1907 38.3
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 3.4e-278 963.0 953 54.1
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 7.6e-270 935.3 1614 37.5
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 3.9e-266 922.9 2021 33.3
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.7e-266 922.2 891 54.9
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 4.6e-259 899.4 2048 33.3
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.7e-258 895.6 1063 50.2
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.5e-257 893.6 1766 34.4
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 4.1e-223 780.0 1122 43.1
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 8.6e-213 745.7 992 46.3
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 8.6e-205 719.2 943 48.6
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 3.6e-203 713.8 1441 33.7
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.5e-201 708.4 1052 41.4
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 3.1e-194 684.1 999 41.7
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.2e-187 662.1 573 59.0
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.8e-187 661.0 1797 28.9
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.1e-151 542.7 468 61.3
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 3.3e-140 504.6 539 50.6
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.8e-130 472.2 565 45.1
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.7e-126 457.6 560 46.1
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.3e-124 451.4 661 42.1
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.4e-117 429.5 540 45.4
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.5e-92 346.3 295 60.0
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.9e-90 339.3 641 37.9
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-79 303.5 457 41.8
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 3.8e-59 235.3 221 55.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 9.0e-53 214.2 353 36.3
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.9e-51 209.1 380 37.9
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.0e-48 200.7 347 38.6
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.5e-44 185.3 224 43.8
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 2.5e-42 179.5 181 49.7
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 2.5e-39 169.5 430 35.6
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 4.3e-39 168.7 127 68.5
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 7.4e-39 167.9 256 38.3
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.0e-35 157.5 141 52.5
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 2.9e-35 156.0 648 28.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-34 153.7 162 50.0
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 2.3e-32 146.4 161 49.7
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 8.7e-32 144.4 1164 19.8
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-30 139.8 162 46.3
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.9e-27 129.4 119 60.5
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 2.5e-26 126.3 415 27.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 6.1e-25 121.7 110 54.5
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 5.9e-20 105.1 151 45.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 7.7e-20 104.8 92 54.3
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.7e-19 103.6 81 61.7
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 3.8e-19 102.4 86 55.8
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.1e-18 100.9 229 34.5
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-13 84.3 54 68.5
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 9.1e-13 81.3 56 62.5
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 1.5e-10 73.9 371 24.5
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 4.2e-10 72.4 140 35.7
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 2.7e-09 69.7 70 52.9
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 5.2e-08 65.5 134 32.8
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.2e-07 64.3 71 46.5


User provided reference genes

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