Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 0.0e+00 1209.5 617 100.0
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 0.0e+00 1157.9 615 95.3
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 0.0e+00 1156.0 615 95.0
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 0.0e+00 1118.6 614 93.6
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 0.0e+00 1112.4 616 93.0
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 0.0e+00 1104.4 617 91.9
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 0.0e+00 1094.0 599 93.0
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 0.0e+00 1077.4 601 91.5
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.5e-294 1015.0 616 82.1
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.3e-292 1009.2 618 82.2
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.8e-289 998.8 617 81.8
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 6.5e-287 990.3 641 78.2
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 9.4e-286 986.5 615 81.6
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.0e-284 983.0 617 79.9
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 4.3e-283 977.6 618 79.9
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.4e-283 976.9 617 79.3
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 6.3e-282 973.8 615 78.5
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 8.2e-282 973.4 618 79.9
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.4e-281 971.8 618 79.0
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 4.1e-281 971.1 618 79.0
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 1.2e-280 969.5 618 79.3
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.5e-280 969.1 618 79.4
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.3e-279 966.1 617 79.4
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.7e-279 965.7 618 79.1
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 1.7e-279 965.7 615 78.2
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.7e-279 965.7 618 78.8
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 2.9e-279 964.9 617 78.1
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.9e-279 964.9 618 78.8
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 1.1e-278 963.0 617 78.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 5.5e-278 960.7 617 78.9
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 7.2e-278 960.3 656 75.2
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 7.2e-278 960.3 621 78.6
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 7.2e-278 960.3 618 78.2
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 9.4e-278 959.9 617 78.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 3.6e-277 958.0 617 78.3
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 3.6e-277 958.0 618 77.8
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 3.6e-277 958.0 618 77.7
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 7.9e-277 956.8 618 77.0
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.0e-276 954.9 614 78.2
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.9e-276 954.5 618 78.3
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 7.4e-275 950.3 617 77.5
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.2e-274 948.7 617 77.1
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.8e-274 947.6 624 76.4
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 4.5e-272 941.0 618 76.5
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 1.0e-271 939.9 608 76.3
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.8e-271 937.9 618 76.9
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 3.8e-271 937.9 617 76.5
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.0e-271 937.6 628 75.6
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 9.4e-270 933.3 753 66.5
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 3.6e-269 931.4 610 76.4
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 2.3e-268 928.7 617 75.7
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 2.0e-267 925.6 574 80.7
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 3.3e-267 924.9 616 75.5
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 3.3e-267 924.9 615 76.7
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 4.4e-267 924.5 615 75.8
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 4.4e-267 924.5 615 75.8
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 5.7e-267 924.1 616 75.3
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.7e-266 922.5 615 75.6
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.8e-266 921.8 616 75.2
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.8e-266 921.8 612 75.0
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 4.8e-266 921.0 612 74.8
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.4e-265 919.5 644 72.2
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.4e-265 919.5 619 75.3
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 5.3e-265 917.5 616 75.3
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 7.0e-265 917.1 618 75.1
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 9.1e-265 916.8 618 75.1
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.6e-264 916.0 616 75.2
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 2.6e-264 915.2 616 75.2
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 7.7e-264 913.7 684 70.0
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 6.5e-263 910.6 616 74.7
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 3.2e-262 908.3 617 74.1
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 9.4e-262 906.7 617 74.2
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.4e-260 902.9 649 71.5
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 6.7e-260 900.6 623 73.2
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.5e-259 899.4 628 72.1
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 7.5e-259 897.1 622 72.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.7e-258 896.0 541 82.1
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 8.3e-258 893.6 616 73.4
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.6e-256 889.4 613 73.4
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.1e-254 883.2 618 73.0
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.7e-253 877.9 633 71.6
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 9.8e-251 870.2 617 71.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 5.9e-248 860.9 582 74.9
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 2.9e-247 858.6 615 69.4
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 6.6e-247 857.4 639 69.2
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.7e-242 841.6 516 80.4
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 2.4e-241 839.0 615 68.5
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 9.2e-241 837.0 516 80.0
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 2.5e-230 802.4 574 71.1
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 4.3e-230 801.6 615 67.3
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.7e-229 798.1 623 67.1
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 3.4e-227 792.0 616 64.9
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 5.1e-223 778.1 468 82.1
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.1e-221 772.7 513 76.2
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 9.9e-211 737.3 529 73.2
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.3e-205 720.3 616 57.8
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.3e-202 710.3 620 57.7
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 3.8e-202 708.8 446 78.9
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.4e-202 707.6 557 67.0
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.3e-191 673.7 615 55.8
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 7.9e-176 621.3 649 49.5
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.8e-157 558.9 616 49.0
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.1e-156 557.8 361 78.7
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 5.3e-148 528.9 360 75.6
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 4.5e-147 525.8 616 46.3
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.5e-145 520.8 342 78.1
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.7e-144 516.5 487 60.0
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 2.9e-138 496.5 364 68.4
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.2e-136 491.1 388 66.2
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.4e-119 434.5 510 45.7
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 5.8e-118 429.1 596 44.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.5e-107 393.3 437 54.7
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.2e-101 374.0 287 68.3
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 5.2e-95 352.8 457 49.0
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.9e-73 281.2 175 80.6
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.1e-71 275.4 171 80.7
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.5e-67 260.4 186 67.7
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.3e-56 223.0 133 81.2
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.7e-48 198.4 117 81.2
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.9e-47 193.0 143 69.9
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.5e-46 191.8 150 64.0
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.7e-46 189.5 152 65.8
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 8.5e-45 186.0 122 76.2
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.9e-44 184.9 105 80.0
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 9.4e-44 182.6 135 66.7
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 4.7e-43 180.3 106 79.2
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.5e-36 158.7 178 50.0
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 2.4e-31 141.4 128 61.7
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 4.1e-31 140.6 86 82.6
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-27 129.0 105 64.8
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 3.4e-25 120.9 59 89.8
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 3.4e-25 120.9 59 89.8
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 3.7e-24 117.5 107 52.3
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.7e-24 117.5 84 71.4
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 2.2e-21 108.2 58 81.0
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 7.2e-20 103.2 117 59.0
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.6e-19 102.1 78 60.3
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 4.7e-19 100.5 59 72.9
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 3.0e-18 97.8 69 62.3
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 8.8e-18 96.3 76 68.4
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 2.4e-15 88.2 50 78.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.7e-14 84.7 74 59.5
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-11 75.5 80 50.0
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 6.8e-10 70.1 54 59.3
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 8.9e-10 69.7 51 54.9
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.5e-09 68.9 46 78.3
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.9e-08 63.9 38 71.1
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 7.8e-06 56.6 85 43.5
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 7.8e-06 56.6 53 62.3


User provided reference genes

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