Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.9e-283 978.4 467 100.0
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.4e-257 891.7 464 89.2
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.5e-248 862.4 465 86.7
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 7.7e-248 860.1 465 86.7
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 8.8e-228 793.5 458 79.7
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.6e-221 771.5 490 76.3
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.3e-204 715.7 471 73.9
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.4e-188 663.3 457 65.2
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 2.1e-181 639.4 458 62.7
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 2.8e-173 612.5 458 61.1
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.0e-172 608.6 455 61.5
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.2e-171 607.1 459 61.7
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 6.0e-168 594.7 461 59.9
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.0e-167 594.0 457 58.9
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 4.8e-165 585.1 458 59.2
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.2e-160 570.5 470 57.2
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 9.6e-158 560.8 406 63.1
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 9.6e-158 560.8 458 58.5
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.8e-157 559.3 458 58.3
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 6.9e-156 554.7 464 57.3
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.0e-155 553.1 458 57.6
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 5.1e-151 538.5 458 54.1
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 2.5e-150 536.2 462 52.8
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.3e-150 535.4 458 53.7
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 9.6e-150 534.3 459 53.8
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.6e-149 533.5 459 53.8
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 1.2e-147 527.3 539 48.1
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.5e-147 525.4 458 54.1
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 7.6e-147 524.6 458 53.5
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.1e-145 520.8 457 52.7
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.6e-144 516.9 457 52.5
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.6e-144 515.4 419 60.1
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 5.7e-142 508.4 422 53.3
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.3e-141 507.3 457 50.3
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.6e-141 506.9 458 51.7
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.2e-138 496.5 507 47.7
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 2.2e-138 496.5 458 50.4
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.1e-134 484.2 460 49.8
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.9e-134 483.4 458 50.7
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 1.3e-133 480.7 439 50.3
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 4.1e-132 475.7 457 49.2
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 5.3e-132 475.3 484 50.4
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 3.4e-131 472.6 459 49.5
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 4.5e-131 472.2 461 48.2
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 1.3e-130 470.7 458 47.8
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 6.5e-130 468.4 456 50.0
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.8e-127 460.3 458 48.3
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.3e-125 454.1 448 48.4
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.1e-124 451.1 461 47.7
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 3.4e-123 446.0 438 48.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.9e-123 445.3 458 48.7
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 7.4e-118 428.3 467 46.9
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.7e-117 426.0 471 44.8
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.6e-115 419.9 457 46.6
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 5.0e-114 415.6 387 50.4
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 6.7e-111 405.2 377 52.8
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 8.2e-109 398.3 458 44.1
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 2.4e-108 396.7 530 42.8
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 4.1e-108 396.0 412 48.1
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.2e-107 394.4 440 46.6
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.6e-107 394.0 440 46.6
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.5e-107 392.9 435 43.7
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 3.5e-107 392.9 466 43.1
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.9e-107 392.1 435 43.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.9e-107 392.1 435 43.7
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.2e-106 390.2 467 43.3
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 5.7e-102 375.6 466 40.8
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.7e-102 375.6 466 40.8
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.2e-101 373.6 465 41.5
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.2e-101 373.6 466 40.8
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.8e-101 373.2 359 47.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.1e-100 371.3 459 40.1
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.2e-99 367.9 467 40.5
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 4.2e-97 359.4 460 43.3
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 7.2e-97 358.6 462 40.5
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 9.4e-97 358.2 493 38.5
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.6e-96 357.5 472 38.3
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.7e-96 355.9 454 38.8
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 6.1e-96 355.5 454 38.8
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.0e-96 355.1 501 37.9
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 2.3e-95 353.6 381 47.5
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.7e-93 347.4 454 38.1
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 2.8e-93 346.7 444 40.8
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 7.0e-92 342.0 448 41.7
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.6e-91 340.9 456 40.4
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.6e-91 340.9 465 40.9
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.0e-91 340.5 261 59.0
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 3.5e-91 339.7 440 40.0
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.9e-90 336.7 456 40.1
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 6.6e-90 335.5 442 42.1
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.8e-88 330.1 443 41.5
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 3.6e-88 329.7 456 39.3
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 6.1e-88 328.9 460 40.2
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 1.4e-87 327.8 459 39.2
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.4e-87 327.8 453 38.4
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.8e-87 327.4 469 38.0
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.8e-87 327.4 469 38.0
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.2e-86 324.7 459 39.9
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.5e-86 324.3 457 40.0
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 4.4e-86 322.8 461 39.3
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 4.4e-86 322.8 457 38.9
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 9.8e-86 321.6 456 38.6
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 4.9e-85 319.3 454 38.1
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 6.4e-85 318.9 460 39.1
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 9.2e-84 315.1 455 37.1
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 3.5e-83 313.2 455 37.1
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.7e-82 310.8 457 38.3
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.9e-82 310.1 478 37.9
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 5.6e-81 305.8 470 37.7
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.6e-80 304.3 464 36.4
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.0e-79 301.6 383 42.8
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 5.2e-79 299.3 457 39.8
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 4.4e-78 296.2 475 35.8
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 7.5e-78 295.4 471 36.5
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.2e-77 293.9 307 49.2
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 2.9e-77 293.5 304 47.7
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 8.3e-77 292.0 477 35.6
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.1e-76 289.7 473 35.7
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.7e-74 284.3 453 37.3
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 9.5e-73 278.5 333 41.7
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 4.7e-72 276.2 380 39.5
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 8.9e-71 271.9 459 36.2
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.0e-70 270.8 255 51.8
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 2.6e-70 270.4 460 36.3
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 2.6e-70 270.4 460 36.3
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.4e-70 269.6 316 44.3
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 4.9e-69 266.2 460 35.2
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 4.1e-68 263.1 459 35.9
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 4.1e-68 263.1 254 48.0
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.2e-67 261.5 459 35.7
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.3e-66 258.1 486 32.7
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 3.0e-66 256.9 496 32.7
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 3.9e-66 256.5 489 33.9
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.9e-65 254.2 462 33.8
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.3e-65 253.1 502 31.5
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 8.1e-64 248.8 301 44.9
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.4e-62 243.0 441 36.3
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 5.8e-62 242.7 260 46.9
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 3.2e-60 236.9 424 32.3
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.5e-57 228.0 305 40.0
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.8e-55 221.1 507 32.7
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.0e-50 205.3 270 38.1
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.6e-49 199.5 193 50.8
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 5.8e-46 189.5 361 32.4
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 3.0e-42 177.2 174 48.3
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 5.1e-42 176.4 135 57.0
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 6.6e-42 176.0 293 36.9
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 7.4e-41 172.6 283 36.4
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 9.0e-39 165.6 198 43.9
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.9e-31 139.4 177 43.5
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 3.4e-30 137.1 436 26.6
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 3.2e-28 130.6 196 36.7
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 3.0e-26 124.0 84 69.0
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 1.6e-19 101.7 335 25.4
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.8e-18 98.2 121 41.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.5e-14 85.1 135 34.8
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 5.9e-14 83.2 159 33.3
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.7e-13 81.6 82 41.5
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.1e-12 79.0 110 40.9
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 1.6e-11 75.1 55 60.0
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 6.1e-11 73.2 60 58.3
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 3.0e-10 70.9 71 45.1
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 4.8e-08 63.5 86 39.5
Dinv32093 Davidia involucrata HOM05D004162 ORTHO05D004543 3.4e-06 57.4 49 63.3


User provided reference genes

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