Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.6e-225 785.8 404 100.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.8e-200 702.6 404 88.4
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.0e-184 650.2 405 82.2
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 9.7e-183 643.7 406 81.3
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 9.7e-183 643.7 406 81.3
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.0e-180 636.0 406 80.3
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.1e-178 630.2 404 79.0
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.2e-175 620.2 404 79.5
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.2e-175 620.2 406 78.3
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 2.2e-174 615.9 404 78.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 4.1e-173 611.7 404 76.2
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 5.4e-173 611.3 404 78.0
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.6e-172 609.8 404 76.7
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.7e-172 609.0 404 76.7
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.7e-172 609.0 404 76.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 3.8e-171 605.1 403 77.9
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 2.8e-169 599.0 404 75.7
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 4.7e-169 598.2 404 74.8
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.4e-168 596.7 419 73.3
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 2.3e-168 595.9 405 75.3
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 4.0e-168 595.1 406 75.6
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 5.2e-168 594.7 398 77.4
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 2.6e-167 592.4 404 74.5
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.7e-166 589.7 404 74.5
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.7e-166 588.6 404 74.5
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.1e-165 585.5 404 75.0
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.1e-165 585.5 398 75.4
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 4.1e-165 585.1 407 74.9
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 3.5e-164 582.0 404 72.8
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 7.8e-164 580.9 409 74.8
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 7.8e-164 580.9 404 73.5
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.7e-163 579.7 405 73.1
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.9e-163 578.9 409 74.6
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 6.6e-163 577.8 409 73.1
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-162 577.0 409 73.1
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-162 577.0 409 73.1
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.1e-162 577.0 399 74.2
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.9e-162 576.2 405 72.3
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.9e-162 576.2 405 72.3
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.9e-162 576.2 404 73.0
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 3.3e-162 575.5 450 67.6
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 4.3e-162 575.1 398 73.4
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.6e-162 574.7 406 73.6
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 7.3e-162 574.3 404 73.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.6e-161 573.2 404 72.5
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.6e-161 573.2 453 68.0
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 3.6e-161 572.0 402 73.1
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 6.1e-161 571.2 409 72.9
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.0e-160 570.5 405 72.6
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.4e-160 570.1 409 71.9
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.0e-160 568.5 409 71.4
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 6.8e-160 567.8 402 73.1
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.2e-159 567.0 405 71.1
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 2.0e-159 566.2 443 69.3
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.4e-159 565.5 409 70.9
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.4e-159 565.5 404 72.3
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 5.7e-159 564.7 409 70.7
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.8e-159 563.9 409 70.4
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.7e-158 563.1 405 74.6
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 6.4e-158 561.2 404 71.3
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.1e-157 560.5 404 72.0
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.4e-157 560.1 401 71.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 3.2e-157 558.9 399 72.4
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 4.1e-157 558.5 404 71.0
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 7.0e-157 557.8 405 72.6
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 2.0e-156 556.2 405 70.9
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 5.9e-156 554.7 406 71.4
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 7.8e-156 554.3 409 69.7
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.0e-155 553.9 397 70.8
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.3e-155 553.5 399 71.4
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.3e-155 553.5 397 71.5
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.7e-155 553.1 406 70.9
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.1e-154 550.4 389 72.8
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.5e-154 550.1 408 69.4
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 3.3e-154 548.9 410 71.5
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 8.0e-153 544.3 398 70.1
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 8.0e-153 544.3 406 69.5
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.1e-152 543.9 399 71.7
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.4e-152 543.5 401 69.6
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 8.9e-152 540.8 400 69.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 7.5e-151 537.7 406 68.7
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 9.8e-151 537.3 404 69.1
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 9.8e-151 537.3 404 69.1
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.7e-150 536.6 401 69.1
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.7e-150 536.6 401 69.1
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 2.9e-150 535.8 406 68.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.9e-150 535.8 412 68.9
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 4.9e-150 535.0 439 63.8
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 6.4e-150 534.6 406 68.5
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 6.4e-150 534.6 406 68.2
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 8.3e-150 534.3 402 67.7
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.1e-149 533.9 406 68.2
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 2.4e-149 532.7 407 68.1
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.4e-149 532.7 400 69.0
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 3.2e-149 532.3 406 68.5
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.6e-148 530.0 403 71.0
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 2.0e-148 529.6 400 69.0
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.3e-147 526.2 430 64.2
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 2.3e-147 526.2 408 65.4
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 6.6e-147 524.6 401 68.1
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 6.6e-147 524.6 294 92.2
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 2.5e-146 522.7 405 67.2
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 4.3e-146 521.9 397 66.5
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.3e-146 521.2 412 67.0
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.5e-146 520.8 406 67.2
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.2e-145 520.4 404 67.1
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 6.2e-145 518.1 407 69.5
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 4.0e-144 515.4 402 66.7
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 8.9e-144 514.2 406 66.0
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 7.5e-143 511.1 404 66.3
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 2.9e-142 509.2 406 64.5
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.9e-142 509.2 404 65.3
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-140 503.4 408 63.2
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-139 500.4 404 65.8
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 3.6e-137 492.3 404 60.9
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.1e-136 490.7 399 63.9
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.5e-135 486.9 416 64.9
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 4.6e-132 475.3 403 63.3
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.9e-130 469.9 442 62.7
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 6.4e-126 454.9 375 62.4
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 4.3e-122 442.2 334 70.4
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.3e-122 441.4 519 49.9
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.3e-118 430.6 376 61.7
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 9.3e-117 424.5 361 63.4
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 4.3e-114 415.6 434 54.4
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 3.8e-110 402.5 404 54.2
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 9.3e-109 397.9 403 56.6
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 7.1e-101 371.7 410 50.0
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 7.1e-101 371.7 410 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 2.7e-92 343.2 398 48.5
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 7.4e-90 335.1 400 51.8
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.2e-85 319.7 407 45.2
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 2.2e-81 307.0 403 47.9
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 5.9e-79 298.9 201 77.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 6.3e-65 252.3 428 39.0
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.1e-64 251.5 358 44.1
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.2e-62 243.8 276 53.3
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.4e-56 223.8 299 44.1
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.5e-53 211.8 151 72.8
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.9e-41 172.9 147 64.6
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 3.0e-30 137.1 99 71.7
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.4e-24 117.5 105 56.2
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.6e-23 114.8 93 63.4
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.1e-23 114.4 408 28.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 1.7e-22 111.3 69 81.2
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 6.6e-22 109.4 128 47.7
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.5e-21 108.2 82 69.5
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.2e-20 102.8 79 69.6
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.1e-19 100.5 73 67.1
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 1.6e-15 88.2 79 58.2
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.1e-15 87.8 68 61.8
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.0e-14 85.5 435 25.3
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 4.7e-12 76.6 260 28.8
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 6.2e-12 76.3 381 23.9
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 1.4e-11 75.1 452 22.6
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.0e-11 73.6 55 70.9
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 2.7e-07 60.8 41 73.2


User provided reference genes

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