Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G504.96 Capsicum annuum HOM05D004009 ORTHO05D004617 1.9e-44 182.2 97 100.0
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 5.8e-25 117.5 87 77.0
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 1.3e-24 116.3 87 75.9
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.3e-24 116.3 87 77.0
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.7e-24 115.9 87 75.9
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 2.2e-24 115.5 87 75.9
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 4.9e-24 114.4 87 75.9
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 8.4e-24 113.6 87 73.6
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 1.1e-23 113.2 87 72.4
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 1.1e-23 113.2 87 72.4
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 9.3e-23 110.2 87 72.4
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 4.3e-20 101.3 87 66.7
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 9.6e-20 100.1 87 65.5
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 4.8e-19 97.8 87 62.1
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 4.8e-19 97.8 86 62.8
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 1.8e-18 95.9 87 62.1
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 2.4e-18 95.5 87 62.1
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 4.0e-18 94.7 87 65.5
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 5.3e-18 94.4 87 60.9
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 5.3e-18 94.4 87 65.5
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 5.3e-18 94.4 87 66.7
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 5.3e-18 94.4 87 60.9
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 6.9e-18 94.0 87 65.5
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 6.9e-18 94.0 87 66.7
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 6.9e-18 94.0 87 60.9
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 6.9e-18 94.0 87 60.9
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 6.9e-18 94.0 87 65.5
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 1.2e-17 93.2 87 63.2
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 1.5e-17 92.8 87 65.5
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 1.5e-17 92.8 93 61.3
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.5e-17 92.8 93 61.3
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.5e-17 92.8 93 61.3
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.5e-17 92.8 93 61.3
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 1.5e-17 92.8 87 63.2
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 1.5e-17 92.8 87 63.2
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 1.5e-17 92.8 93 61.3
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 1.5e-17 92.8 87 58.6
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 2.0e-17 92.4 87 65.5
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 2.0e-17 92.4 87 64.4
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 2.6e-17 92.0 93 60.2
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 2.6e-17 92.0 93 60.2
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 2.6e-17 92.0 87 65.5
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 3.4e-17 91.7 87 65.5
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 3.4e-17 91.7 87 65.5
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 3.4e-17 91.7 87 63.2
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 4.5e-17 91.3 87 63.2
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 4.5e-17 91.3 87 63.2
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 4.5e-17 91.3 87 62.1
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 4.5e-17 91.3 87 62.1
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 4.5e-17 91.3 87 62.1
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 4.5e-17 91.3 87 58.6
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 4.5e-17 91.3 87 63.2
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 5.8e-17 90.9 87 63.2
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 5.8e-17 90.9 87 62.1
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 7.6e-17 90.5 87 59.8
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 7.6e-17 90.5 87 65.5
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 7.6e-17 90.5 87 62.1
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 7.6e-17 90.5 87 63.2
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 1.0e-16 90.1 87 60.9
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 1.0e-16 90.1 87 60.9
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.3e-16 89.7 87 63.2
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 1.3e-16 89.7 87 62.1
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 1.3e-16 89.7 93 58.1
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 1.3e-16 89.7 105 53.3
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 1.7e-16 89.4 103 51.5
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 1.7e-16 89.4 87 63.2
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 1.7e-16 89.4 93 58.1
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 1.7e-16 89.4 87 64.4
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 2.2e-16 89.0 87 62.1
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 2.2e-16 89.0 87 62.1
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 2.2e-16 89.0 87 62.1
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 2.2e-16 89.0 87 62.1
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 2.2e-16 89.0 87 62.1
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 2.9e-16 88.6 87 63.2
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 2.9e-16 88.6 87 60.9
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 2.9e-16 88.6 87 62.1
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 3.8e-16 88.2 87 60.9
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.8e-16 88.2 87 60.9
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.8e-16 88.2 87 60.9
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 4.9e-16 87.8 87 59.8
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 4.9e-16 87.8 87 60.9
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 4.9e-16 87.8 87 59.8
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 4.9e-16 87.8 87 59.8
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 4.9e-16 87.8 87 60.9
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 4.9e-16 87.8 87 59.8
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 4.9e-16 87.8 93 58.1
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 6.5e-16 87.4 87 62.1
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 6.5e-16 87.4 87 59.8
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 6.5e-16 87.4 87 62.1
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 6.5e-16 87.4 87 60.9
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 6.5e-16 87.4 87 57.5
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 6.5e-16 87.4 87 62.1
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 6.5e-16 87.4 87 59.8
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 8.4e-16 87.0 87 59.8
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 8.4e-16 87.0 87 59.8
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 8.4e-16 87.0 87 59.8
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 8.4e-16 87.0 87 62.1
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 1.1e-15 86.7 87 60.9
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 1.1e-15 86.7 87 59.8
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 1.4e-15 86.3 87 60.9
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 1.4e-15 86.3 87 63.2
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 1.4e-15 86.3 87 57.5
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 1.4e-15 86.3 87 59.8
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 1.4e-15 86.3 87 56.3
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.9e-15 85.9 87 60.9
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 1.9e-15 85.9 87 58.6
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 1.9e-15 85.9 87 58.6
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.9e-15 85.9 87 58.6
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 1.9e-15 85.9 87 58.6
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 1.9e-15 85.9 87 58.6
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 1.9e-15 85.9 87 58.6
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-15 85.9 87 58.6
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.9e-15 85.9 93 54.8
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 1.9e-15 85.9 87 58.6
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 2.5e-15 85.5 87 59.8
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 3.2e-15 85.1 87 58.6
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 3.2e-15 85.1 87 58.6
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 3.2e-15 85.1 87 58.6
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 3.2e-15 85.1 87 60.9
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 4.2e-15 84.7 87 59.8
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 4.2e-15 84.7 87 59.8
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 5.5e-15 84.3 87 57.5
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 5.5e-15 84.3 87 58.6
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 5.5e-15 84.3 87 58.6
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 5.5e-15 84.3 88 54.5
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 5.5e-15 84.3 87 60.9
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 7.1e-15 84.0 87 57.5
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 7.1e-15 84.0 87 58.6
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 7.1e-15 84.0 87 57.5
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 7.1e-15 84.0 87 59.8
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.2e-14 83.2 88 56.8
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 1.6e-14 82.8 87 57.5
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 1.6e-14 82.8 87 59.8
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 1.6e-14 82.8 87 57.5
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 2.1e-14 82.4 87 57.5
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 2.7e-14 82.0 87 56.3
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 3.5e-14 81.6 87 57.5
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 3.5e-14 81.6 87 58.6
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 4.6e-14 81.3 81 60.5
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.0e-13 80.1 87 58.6
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 1.8e-13 79.3 87 54.0
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 3.0e-13 78.6 79 60.8
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 3.0e-13 78.6 86 55.8
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 6.7e-13 77.4 87 56.3
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 1.1e-12 76.6 87 52.9
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 1.1e-12 76.6 80 58.8
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 1.5e-12 76.3 87 54.0
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 5.7e-12 74.3 87 51.7
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 1.3e-11 73.2 78 56.4
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.6e-11 72.8 82 53.7
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 1.6e-11 72.8 77 57.1
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.2e-11 72.4 82 53.7
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 2.2e-11 72.4 80 55.0
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.4e-10 69.7 87 52.9
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 2.4e-10 68.9 87 44.8
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.4e-10 68.9 87 54.0
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.1e-10 68.6 77 59.7
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 1.2e-09 66.6 87 49.4
FAN02G3567 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.0e-09 65.9 82 53.7
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 3.4e-09 65.1 87 49.4
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.0e-08 63.5 82 48.8
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.3e-08 63.2 82 47.6
Eucgr.F00526 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.4e-07 59.7 74 51.4
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 1.9e-07 59.3 87 41.4
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 3.6e-06 55.1 68 55.9
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 3.6e-06 55.1 68 55.9


User provided reference genes

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