Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G484.124 Capsicum annuum HOM05D003294 ORTHO05D017749 3.8e-26 123.6 53 100.0
Nitab4.5_0000383g0350 Nicotiana tabacum HOM05D003294 ORTHO05D004060 4.0e-15 87.0 46 80.4
PGSC0003DMG400004675 Solanum tuberosum HOM05D003294 ORTHO05D004060 5.2e-15 86.7 56 89.3
Sopen12g033500 Solanum pennellii HOM05D003294 ORTHO05D004060 2.6e-14 84.3 56 87.5
CAN.G484.120 Capsicum annuum HOM05D003294 ORTHO05D004060 7.5e-14 82.8 46 76.1
CAN.G484.117 Capsicum annuum HOM05D003294 ORTHO05D004060 6.4e-13 79.7 40 80.0
Nitab4.5_0002908g0110 Nicotiana tabacum HOM05D003294 ORTHO05D017749 6.4e-13 79.7 56 78.6
Solyc12g150132.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 6.4e-13 79.7 45 75.6
Sopen12g033530 Solanum pennellii HOM05D003294 ORTHO05D004060 8.3e-13 79.3 46 73.9
CAN.G484.121 Capsicum annuum HOM05D003294 ORTHO05D004060 1.1e-12 79.0 46 73.9
CAN.G484.118 Capsicum annuum HOM05D003294 ORTHO05D004060 1.4e-12 78.6 46 73.9
Sopen12g033540 Solanum pennellii HOM05D003294 ORTHO05D004060 1.4e-12 78.6 46 71.7
CAN.G484.119 Capsicum annuum HOM05D003294 ORTHO05D017749 2.4e-12 77.8 57 80.7
Nitab4.5_0000383g0230 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.4e-12 77.8 56 78.6
Nitab4.5_0002252g0100 Nicotiana tabacum HOM05D003294 ORTHO05D017749 5.4e-12 76.6 56 76.8
Sopen12g033520 Solanum pennellii HOM05D003294 ORTHO05D004060 7.0e-12 76.3 57 77.2
Solyc12g098780.2 Solanum lycopersicum HOM05D003294 ORTHO05D004060 9.2e-12 75.9 57 77.2
PGSC0003DMG400021603 Solanum tuberosum HOM05D003294 ORTHO05D004060 9.2e-12 75.9 44 72.7
Sopen12g033510 Solanum pennellii HOM05D003294 ORTHO05D004060 1.2e-11 75.5 57 77.2
CAN.G484.123 Capsicum annuum HOM05D003294 ORTHO05D017749 1.6e-11 75.1 57 70.2
Nitab4.5_0001049g0140 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.1e-11 74.7 57 77.2
Peaxi162Scf00323g00620 Petunia axillaris HOM05D003294 ORTHO05D004060 2.1e-11 74.7 45 66.7
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 2.1e-11 74.7 56 75.0
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 2.1e-11 74.7 56 75.0
Peaxi162Scf39387g00001 Petunia axillaris HOM05D003294 ORTHO05D017749 2.1e-11 74.7 56 75.0
Peaxi162Scf00323g00521 Petunia axillaris HOM05D003294 ORTHO05D004060 2.7e-11 74.3 56 75.0
Solyc12g098800.2 Solanum lycopersicum HOM05D003294 ORTHO05D017749 4.6e-11 73.6 47 74.5
Peaxi162Scf00286g00022 Petunia axillaris HOM05D003294 ORTHO05D004060 7.8e-11 72.8 46 67.4
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 2.3e-10 71.2 39 79.5
VMungo1383G0624 Vigna mungo HOM05D003294 ORTHO05D004060 3.9e-10 70.5 45 66.7
PGSC0003DMG400004676 Solanum tuberosum HOM05D003294 ORTHO05D004060 5.0e-10 70.1 41 73.2
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.1e-09 68.9 45 66.7
Peaxi162Scf00378g00827 Petunia axillaris HOM05D003294 ORTHO05D004060 1.1e-09 68.9 40 72.5
Sopen09g036430 Solanum pennellii HOM05D003294 ORTHO05D004060 1.1e-09 68.9 41 70.7
Oeu006702.1 Olea europaea HOM05D003294 ORTHO05D004060 1.5e-09 68.6 43 72.1
Peaxi162Scf00323g00618 Petunia axillaris HOM05D003294 ORTHO05D004060 1.9e-09 68.2 43 69.8
Solyc12g150131.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.9e-09 68.2 31 93.5
Sed0006652 Sechium edule HOM05D003294 ORTHO05D004060 2.5e-09 67.8 41 70.7
Manes.11G114666 Manihot esculenta HOM05D003294 ORTHO05D004060 3.3e-09 67.4 39 74.4
Phvul.008G003200 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 3.3e-09 67.4 40 70.0
Solyc12g038860.1 Solanum lycopersicum HOM05D003294 ORTHO05D017749 3.3e-09 67.4 57 57.9
Thecc.04G182000 Theobroma cacao HOM05D003294 ORTHO05D004060 3.3e-09 67.4 45 66.7
DCAR_023908 Daucus carota HOM05D003294 ORTHO05D004060 4.3e-09 67.0 43 67.4
Nn1g09740 Nelumbo nucifera HOM05D003294 ORTHO05D004060 5.6e-09 66.6 41 70.7
Aqoxy2G04082 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 7.3e-09 66.2 41 68.3
PGSC0003DMG400002364 Solanum tuberosum HOM05D003294 ORTHO05D004060 7.3e-09 66.2 57 61.4
CAN.G710.61 Capsicum annuum HOM05D003294 ORTHO05D004060 9.5e-09 65.9 40 70.0
Nitab4.5_0020026g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 9.5e-09 65.9 43 65.1
Sopen12g018920 Solanum pennellii HOM05D003294 ORTHO05D004060 9.5e-09 65.9 57 61.4
Lj6C64T13 Lonicera japonica HOM05D003294 ORTHO05D004060 1.6e-08 65.1 41 70.7
HanXRQChr14g0437091 Helianthus annuus HOM05D003294 ORTHO05D004060 2.1e-08 64.7 45 62.2
Lj2g0025231 Lotus japonicus HOM05D003294 ORTHO05D004060 2.1e-08 64.7 39 69.2
PGR142G3893 Punica granatum HOM05D003294 ORTHO05D004060 2.1e-08 64.7 42 66.7
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 2.1e-08 64.7 38 76.3
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 2.1e-08 64.7 38 76.3
CsaV3_4G003720 Cucumis sativus L. HOM05D003294 ORTHO05D004060 2.8e-08 64.3 34 79.4
ECA238G3164 Erigeron canadensis HOM05D003294 ORTHO05D004060 2.8e-08 64.3 46 67.4
PSO017G4822 Papaver somniferum HOM05D003294 ORTHO05D004060 2.8e-08 64.3 39 71.8
Peaxi162Scf00323g00064 Petunia axillaris HOM05D003294 ORTHO05D017749 2.8e-08 64.3 56 69.6
Sed0017100 Sechium edule HOM05D003294 ORTHO05D004060 2.8e-08 64.3 34 79.4
Gorai.005G018000 Gossypium raimondii HOM05D003294 ORTHO05D004060 3.6e-08 63.9 48 58.3
Nitab4.5_0011287g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.6e-08 63.9 36 75.0
Psat0s3952g0120 Pisum sativum HOM05D003294 ORTHO05D004060 3.6e-08 63.9 42 66.7
TPR.G36208 Trifolium pratense HOM05D003294 ORTHO05D004060 3.6e-08 63.9 42 66.7
Dinv22670 Davidia involucrata HOM05D003294 ORTHO05D004060 4.7e-08 63.5 44 70.5
Glyma.20G247850 Glycine max HOM05D003294 ORTHO05D004060 4.7e-08 63.5 40 70.0
Lj6g0023787 Lotus japonicus HOM05D003294 ORTHO05D004060 4.7e-08 63.5 39 69.2
Nitab4.5_0000978g0120 Nicotiana tabacum HOM05D003294 ORTHO05D004060 4.7e-08 63.5 37 73.0
Psat6g050240 Pisum sativum HOM05D003294 ORTHO05D004060 4.7e-08 63.5 42 64.3
Aa31LG1G24960 Aethionema arabicum HOM05D003294 ORTHO05D004060 6.2e-08 63.2 45 62.2
Cpa.g.sc164.2 Carica papaya HOM05D003294 ORTHO05D004060 6.2e-08 63.2 45 64.4
Lj2g0020269 Lotus japonicus HOM05D003294 ORTHO05D004060 6.2e-08 63.2 39 66.7
Actinidia17219 Actinidia chinensis HOM05D003294 ORTHO05D004060 8.1e-08 62.8 46 67.4
arahy.Tifrunner.gnm1.ann1.F7AR35 Arachis hypogaea HOM05D003294 ORTHO05D004060 8.1e-08 62.8 45 60.0
arahy.Tifrunner.gnm1.ann1.U0YEJU Arachis hypogaea HOM05D003294 ORTHO05D004060 8.1e-08 62.8 45 60.0
Migut.G00806 Erythranthe guttata HOM05D003294 ORTHO05D004060 8.1e-08 62.8 40 67.5
Duzib268G0989 Durio zibethinus HOM05D003294 ORTHO05D004060 1.1e-07 62.4 43 58.1
Lsat_1_v5_gn_2_50521 Lactuca sativa HOM05D003294 ORTHO05D004060 1.1e-07 62.4 43 62.8
Potri.014G151101 Populus trichocarpa HOM05D003294 ORTHO05D004060 1.1e-07 62.4 45 64.4
VMungo0720G0780 Vigna mungo HOM05D003294 ORTHO05D004060 1.1e-07 62.4 37 70.3
Dinv44225 Davidia involucrata HOM05D003294 ORTHO05D004060 1.4e-07 62.0 45 66.7
Lsat_1_v5_gn_2_51640 Lactuca sativa HOM05D003294 ORTHO05D004060 1.4e-07 62.0 43 62.8
MBI08_g05488_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.4e-07 62.0 43 62.8
Sabra14G0114500 Salix brachista HOM05D003294 ORTHO05D004060 1.4e-07 62.0 45 64.4
Sabra14G0114900 Salix brachista HOM05D003294 ORTHO05D004060 1.4e-07 62.0 45 64.4
CiPaw.01G105500 Carya illinoinensis HOM05D003294 ORTHO05D004060 1.8e-07 61.6 40 67.5
ClCG07G016610 Citrullus lanatus HOM05D003294 ORTHO05D004060 1.8e-07 61.6 33 78.8
Lsat_1_v5_gn_2_51341 Lactuca sativa HOM05D003294 ORTHO05D004060 1.8e-07 61.6 43 62.8
Lsat_1_v5_gn_2_51461 Lactuca sativa HOM05D003294 ORTHO05D004060 1.8e-07 61.6 50 62.0
Actinidia35892 Actinidia chinensis HOM05D003294 ORTHO05D004060 2.3e-07 61.2 40 67.5
Sabra14G0114800 Salix brachista HOM05D003294 ORTHO05D004060 2.3e-07 61.2 39 71.8
THA.LOC104803514 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 2.3e-07 61.2 46 65.2
TPR.G40851 Trifolium pratense HOM05D003294 ORTHO05D004060 2.3e-07 61.2 45 62.2
PSO017G7143 Papaver somniferum HOM05D003294 ORTHO05D004060 3.1e-07 60.8 36 66.7
BolC3t15227H Brassica oleracea HOM05D003294 ORTHO05D004060 4.0e-07 60.5 45 64.4
CSS0007766 Camellia sinensis var. sinensis HOM05D003294 ORTHO05D004060 4.0e-07 60.5 44 65.9
MBI08_g05491_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 4.0e-07 60.5 40 65.0
Gohir.A02G013500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 5.2e-07 60.1 36 63.9
Gohir.D02G014550 Gossypium hirsutum HOM05D003294 ORTHO05D004060 5.2e-07 60.1 36 63.9
Psat0s3952g0080 Pisum sativum HOM05D003294 ORTHO05D004060 5.2e-07 60.1 35 71.4
Cfa015791 Carpinus fangiana HOM05D003294 ORTHO05D004060 6.8e-07 59.7 39 66.7
HanXRQChr03g0075661 Helianthus annuus HOM05D003294 ORTHO05D004060 6.8e-07 59.7 42 61.9
Medtr1g033080 Medicago truncatula HOM05D003294 ORTHO05D004060 6.8e-07 59.7 40 65.0
Medtr1g033130 Medicago truncatula HOM05D003294 ORTHO05D004060 6.8e-07 59.7 40 65.0
PSO675G6401 Papaver somniferum HOM05D003294 ORTHO05D004060 6.8e-07 59.7 33 72.7
TAR365G0590 Trochodendron aralioides HOM05D003294 ORTHO05D004060 6.8e-07 59.7 39 66.7
Actinidia35893 Actinidia chinensis HOM05D003294 ORTHO05D004060 8.9e-07 59.3 44 65.9
arahy.Tifrunner.gnm1.ann1.NU92WK Arachis hypogaea HOM05D003294 ORTHO05D004060 1.2e-06 58.9 34 70.6
Gohir.D09G203900 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.2e-06 58.9 43 65.1
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 1.2e-06 58.9 40 62.5
MBI08_g20550_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.5e-06 58.5 41 58.5
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 2.0e-06 58.2 36 69.4
Duzib151G0954 Durio zibethinus HOM05D003294 ORTHO05D004060 2.0e-06 58.2 36 69.4
TWI15G0198 Tripterygium wilfordii HOM05D003294 ORTHO05D004060 2.0e-06 58.2 37 70.3
Gohir.A09G210500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 2.6e-06 57.8 38 68.4
Gorai.006G227800 Gossypium raimondii HOM05D003294 ORTHO05D004060 2.6e-06 57.8 34 70.6
Sabra02G0176500 Salix brachista HOM05D003294 ORTHO05D004060 2.6e-06 57.8 36 66.7
BcaC01g05257 Brassica carinata HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
BcaC07g40319 Brassica carinata HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
A03p24060 Brassica napus HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
A04p32470 Brassica napus HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
A09p51590 Brassica napus HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
C03p28650 Brassica napus HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
C04p70160 Brassica napus HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
C08p34360 Brassica napus HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
BolC4t22061H Brassica oleracea HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
BolC4t28519H Brassica oleracea HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
BolC8t51035H Brassica oleracea HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
BraA09t40598Z Brassica rapa HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
FvH4_4g11660 Fragaria vesca HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
FAN07G0287 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
FAN12G0818 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
FAN12G1447 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
FAN17G2242 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
FAN22G1863 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
Psat0s2492g0040 Pisum sativum HOM05D003294 ORTHO05D004060 3.4e-06 57.4 34 67.6
Potri.002G231250 Populus trichocarpa HOM05D003294 ORTHO05D004060 3.4e-06 57.4 39 64.1
Sp4g25280 Schrenkiella parvula HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
SpUn0921_0020 Schrenkiella parvula HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 69.4
unitig_578.g16248 Utricularia gibba HOM05D003294 ORTHO05D004060 3.4e-06 57.4 36 66.7
Lj6A66G18 Lonicera japonica HOM05D003294 ORTHO05D004060 4.4e-06 57.0 44 59.1
Lju521A1G13 Lonicera japonica HOM05D003294 ORTHO05D004060 4.4e-06 57.0 44 59.1
Medtr1g116947 Medicago truncatula HOM05D003294 ORTHO05D004060 4.4e-06 57.0 34 67.6
Phvul.007G002400 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 4.4e-06 57.0 36 63.9
THA.LOC104802293 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 4.4e-06 57.0 36 69.4
unitig_744.g24077 Utricularia gibba HOM05D003294 ORTHO05D004060 4.4e-06 57.0 41 56.1
arahy.Tifrunner.gnm1.ann1.XI0QBF Arachis hypogaea HOM05D003294 ORTHO05D004060 7.5e-06 56.2 33 69.7
Aa31LG10G13630 Aethionema arabicum HOM05D003294 ORTHO05D004060 9.9e-06 55.8 45 60.0
MSTRG.24590 Avicennia marina HOM05D003294 ORTHO05D004060 9.9e-06 55.8 43 58.1
CARHR138220 Cardamine hirsuta HOM05D003294 ORTHO05D004060 9.9e-06 55.8 36 66.7
Lj5g0001019 Lotus japonicus HOM05D003294 ORTHO05D004060 9.9e-06 55.8 30 76.7


User provided reference genes

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