Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G479.26 Capsicum annuum HOM05D000113 ORTHO05D012125 5.7e-69 264.2 144 100.0
PGSC0003DMG401024649 Solanum tuberosum HOM05D000113 ORTHO05D012125 8.0e-63 243.8 144 91.7
Solyc03g115400.2 Solanum lycopersicum HOM05D000113 ORTHO05D012125 9.8e-61 236.9 144 89.6
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 1.3e-60 236.5 139 91.4
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 8.3e-60 233.8 142 88.0
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 1.7e-44 183.0 153 71.9
Nitab4.5_0004284g0070 Nicotiana tabacum HOM05D000113 ORTHO05D002571 7.5e-37 157.5 101 85.1
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 1.7e-33 146.4 149 57.7
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 3.0e-33 145.6 132 62.1
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 3.9e-33 145.2 149 56.4
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 3.3e-32 142.1 133 59.4
Cc04_g15030 Coffea canephora HOM05D000113 ORTHO05D012125 5.6e-32 141.4 145 55.9
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 1.6e-31 139.8 143 55.9
SGA_v2.0_scaffold1221G53867 Striga asiatica HOM05D000113 ORTHO05D012125 6.2e-31 137.9 139 56.8
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 2.4e-30 136.0 139 56.8
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 2.0e-29 132.9 144 50.7
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 9.9e-29 130.6 101 67.3
vmacro16510 Vaccinium macrocarpon HOM05D000113 ORTHO05D002571 1.7e-28 129.8 128 56.2
Eucgr.K02504 Eucalyptus grandis HOM05D000113 ORTHO05D012125 8.4e-28 127.5 156 50.6
Nitab4.5_0001127g0130 Nicotiana tabacum HOM05D000113 ORTHO05D012125 1.1e-27 127.1 111 69.4
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 1.4e-27 126.7 139 48.9
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 4.1e-27 125.2 133 53.4
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 5.4e-27 124.8 101 64.4
PSO013G0399 Papaver somniferum HOM05D000113 ORTHO05D012125 5.4e-27 124.8 138 52.2
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 9.2e-27 124.0 133 53.4
SalBow7G4123 Salvia bowleyana HOM05D000113 ORTHO05D002571 1.2e-26 123.6 94 71.3
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 1.6e-26 123.2 139 52.5
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 2.7e-26 122.5 134 50.7
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 4.6e-26 121.7 148 48.0
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 7.8e-26 120.9 104 64.4
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 7.8e-26 120.9 106 63.2
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 1.3e-25 120.2 136 49.3
Aa31LG7G3740 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.7e-25 119.8 132 55.3
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 1.7e-25 119.8 98 64.3
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 1.7e-25 119.8 135 52.6
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 2.3e-25 119.4 139 49.6
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 3.0e-25 119.0 142 51.4
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 3.0e-25 119.0 140 47.1
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 3.9e-25 118.6 140 50.7
Aa31LG7G3630 Aethionema arabicum HOM05D000113 ORTHO05D002571 5.1e-25 118.2 129 53.5
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 6.6e-25 117.9 137 47.4
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 6.6e-25 117.9 101 61.4
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 1.1e-24 117.1 103 61.2
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 1.9e-24 116.3 106 60.4
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 2.5e-24 115.9 138 51.4
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 3.3e-24 115.5 110 55.5
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 3.3e-24 115.5 142 45.1
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 3.3e-24 115.5 142 47.9
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.6e-24 114.8 103 61.2
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 7.3e-24 114.4 139 48.9
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 7.3e-24 114.4 103 61.2
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 7.3e-24 114.4 124 52.4
Lj1g0013131 Lotus japonicus HOM05D000113 ORTHO05D002571 9.6e-24 114.0 142 51.4
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 1.2e-23 113.6 103 60.2
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 1.2e-23 113.6 103 61.2
Lj5A105G62 Lonicera japonica HOM05D000113 ORTHO05D012125 1.2e-23 113.6 116 56.9
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 1.2e-23 113.6 127 52.0
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 2.8e-23 112.5 126 51.6
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 4.7e-23 111.7 140 50.7
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 4.7e-23 111.7 101 63.4
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 4.7e-23 111.7 109 57.8
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.2e-23 111.3 103 59.2
HPP92_010044 Vanilla planifolia HOM05D000113 ORTHO05D002571 6.2e-23 111.3 138 47.1
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 8.1e-23 110.9 134 52.2
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 1.1e-22 110.5 140 49.3
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 1.1e-22 110.5 102 60.8
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.4e-22 110.2 103 57.3
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 1.4e-22 110.2 140 49.3
AT2G35340 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 3.1e-22 109.0 133 51.1
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 3.1e-22 109.0 136 50.0
HanXRQChr10g0308651 Helianthus annuus HOM05D000113 ORTHO05D002571 5.2e-22 108.2 106 56.6
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 6.9e-22 107.8 133 47.4
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 9.0e-22 107.5 102 58.8
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 1.2e-21 107.1 103 59.2
AUR62029968 Chenopodium quinoa HOM05D000113 ORTHO05D012125 1.5e-21 106.7 122 52.5
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 1.5e-21 106.7 103 58.3
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 2.6e-21 105.9 97 59.8
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 3.4e-21 105.5 103 55.3
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 4.4e-21 105.1 96 59.4
Peaxi162Scf00201g00132 Petunia axillaris HOM05D000113 ORTHO05D002571 5.8e-21 104.8 69 82.6
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 5.8e-21 104.8 95 62.1
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 5.8e-21 104.8 95 61.1
Dinv22270 Davidia involucrata HOM05D000113 ORTHO05D002571 1.7e-20 103.2 100 60.0
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 2.2e-20 102.8 143 49.0
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 3.8e-20 102.1 103 58.3
Nn2g13470 Nelumbo nucifera HOM05D000113 ORTHO05D002571 3.8e-20 102.1 103 55.3
SEGI_02990 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 3.8e-20 102.1 128 46.1
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 8.4e-20 100.9 103 56.3
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 1.1e-19 100.5 134 50.0
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 3.2e-19 99.0 80 65.0
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 1.2e-18 97.1 96 56.2
AL7G28140 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 1.6e-18 96.7 141 46.1
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 6.0e-18 94.7 141 46.1
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 1.3e-17 93.6 95 53.7
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 1.3e-17 93.6 95 53.7
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 1.3e-17 93.6 95 53.7
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 2.3e-17 92.8 93 53.8
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 2.3e-17 92.8 93 53.8
Nitab4.5_0008517g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.3e-17 92.8 106 51.9
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 3.9e-17 92.0 103 50.5
QL10p018794 Quercus lobata HOM05D000113 ORTHO05D002571 8.7e-17 90.9 96 57.3
BcaB03g13727 Brassica carinata HOM05D000113 ORTHO05D012125 1.1e-16 90.5 94 51.1
Mapoly0054s0103 Marchantia polymorpha HOM05D000113 ORTHO05D002571 1.9e-16 89.7 139 44.6
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 1.9e-16 89.7 144 45.1
DCAR_026352 Daucus carota HOM05D000113 ORTHO05D002571 2.5e-16 89.4 142 39.4
Nitab4.5_0000219g0080 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.5e-16 89.4 104 51.9
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 3.3e-16 89.0 88 54.5
CSS0030678 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 7.3e-16 87.8 131 45.8
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 9.6e-16 87.4 80 57.5
Ciclev10024265m.g Citrus clementina HOM05D000113 ORTHO05D012125 3.6e-15 85.5 108 49.1
MD02G1072500 Malus domestica HOM05D000113 ORTHO05D002571 3.6e-15 85.5 142 42.3
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 4.8e-15 85.1 162 39.5
CDE02G1559 Ceratophyllum demersum HOM05D000113 ORTHO05D002571 1.1e-14 84.0 139 41.0
HanXRQChr12g0377671 Helianthus annuus HOM05D000113 ORTHO05D012125 1.1e-14 84.0 138 42.8
FvH4_1g06760 Fragaria vesca HOM05D000113 ORTHO05D002571 3.1e-14 82.4 143 42.0
Atru.chr12.1784 Acer truncatum HOM05D000113 ORTHO05D012125 5.3e-14 81.6 75 61.3
FAN23G0734 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.9e-14 81.3 143 42.0
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 9.0e-14 80.9 76 55.3
Nitab4.5_0004622g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 1.5e-13 80.1 81 58.0
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 7.6e-13 77.8 145 41.4
Hund09854 Selenicereus undatus HOM05D000113 ORTHO05D012125 1.7e-12 76.6 153 40.5
Ah.13g073050 Amaranthus hybridus HOM05D000113 ORTHO05D002571 2.2e-12 76.3 88 52.3
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 1.1e-11 73.9 109 43.1
Pp3c1_18490 Physcomitrium patens HOM05D000113 ORTHO05D002571 1.4e-11 73.6 94 42.6
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 4.2e-11 72.0 68 58.8
SMO356G0256 Selaginella moellendorffii HOM05D000113 ORTHO05D002571 5.4e-11 71.6 99 43.4
CBR_g24329 Chara braunii HOM05D000113 ORTHO05D002571 1.0e-09 67.4 96 41.7
Ciclev10017694m.g Citrus clementina HOM05D000113 ORTHO05D012125 1.0e-09 67.4 76 51.3
QL93p0191_0033 Quercus lobata HOM05D000113 ORTHO05D002571 1.0e-09 67.4 73 56.2
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 1.3e-09 67.0 85 54.1
Os05g0389800 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D002571 1.3e-09 67.0 71 49.3
SEGI_38837 Sequoiadendron giganteum HOM05D000113 ORTHO05D012125 1.8e-09 66.6 72 50.0
RcHm_v2.0_Chr2g0092541 Rosa chinensis HOM05D000113 ORTHO05D002571 5.1e-09 65.1 71 46.5
FAN19G0651 Fragaria x ananassa HOM05D000113 ORTHO05D002571 3.3e-08 62.4 71 46.5
Cre07.g349100 Chlamydomonas reinhardtii HOM05D000113 ORTHO05D002571 4.3e-08 62.0 102 36.3
FAN26G0107 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.3e-08 62.0 157 33.1
FvH4_1g06770 Fragaria vesca HOM05D000113 ORTHO05D002571 7.4e-08 61.2 71 45.1
Prupe.6G014300 Prunus persica HOM05D000113 ORTHO05D012125 9.6e-08 60.8 80 42.5
FAN26G1920 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.6e-07 60.1 155 32.9
FAN26G0487 Fragaria x ananassa HOM05D000113 ORTHO05D012125 2.8e-07 59.3 76 50.0
FAN26G1966 Fragaria x ananassa HOM05D000113 ORTHO05D012125 2.8e-07 59.3 76 50.0
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 1.4e-06 57.0 79 46.8
Gohir.A04G140200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 5.3e-06 55.1 67 43.3
Gohir.D04G183400 Gossypium hirsutum HOM05D000113 ORTHO05D002571 5.3e-06 55.1 100 38.0
SHI27002 Sapria himalayana HOM05D000113 ORTHO05D012125 5.3e-06 55.1 146 34.9


User provided reference genes

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