Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.4e-139 499.6 250 100.0
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.9e-84 315.8 175 88.0
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 8.4e-84 314.3 175 88.0
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.9e-83 313.2 175 88.0
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.1e-78 297.4 175 85.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.8e-78 296.6 171 86.5
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.8e-77 291.6 175 83.4
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 5.6e-72 275.0 175 77.1
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 5.6e-72 275.0 175 77.1
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.2e-71 271.6 175 76.6
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.1e-70 269.2 173 75.1
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.4e-69 265.8 175 74.3
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.1e-67 260.8 175 73.1
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.1e-66 256.5 173 72.3
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.0e-65 254.2 175 71.4
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.8e-65 253.4 180 64.4
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.7e-65 251.5 175 68.6
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.7e-65 251.5 178 68.5
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.9e-64 250.0 178 67.4
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-64 249.6 175 68.0
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 4.3e-64 248.8 185 65.4
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 4.3e-64 248.8 172 69.2
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.6e-64 248.4 170 69.4
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.1e-63 246.5 174 68.4
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.7e-63 245.7 175 66.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.8e-63 245.4 171 67.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.4e-62 243.8 178 65.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-62 243.8 159 74.8
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.4e-62 243.8 187 62.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.8e-62 243.4 175 64.6
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.8e-62 243.4 166 71.1
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.4e-62 243.0 183 65.6
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.4e-62 243.0 166 69.9
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.4e-62 243.0 170 69.4
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.1e-62 242.7 174 68.4
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.1e-62 242.7 170 69.4
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.3e-62 241.9 170 68.8
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 5.3e-62 241.9 178 64.6
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 6.9e-62 241.5 170 68.2
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 9.0e-62 241.1 170 68.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 9.0e-62 241.1 170 68.8
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 9.0e-62 241.1 170 68.8
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 9.0e-62 241.1 169 69.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.5e-61 240.4 175 62.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.5e-61 240.4 175 63.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.5e-61 240.4 176 62.5
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.0e-61 240.0 175 64.0
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.6e-61 239.6 172 65.7
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.8e-61 238.4 168 68.5
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.8e-61 238.4 171 67.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.0e-60 237.7 170 68.8
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.0e-60 237.7 175 61.7
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.7e-60 236.9 175 62.3
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.2e-60 236.5 175 62.3
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 2.9e-60 236.1 179 64.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-60 236.1 175 65.7
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-60 236.1 175 65.7
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.9e-60 236.1 175 62.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.9e-60 236.1 175 65.1
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.9e-60 236.1 175 65.1
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.9e-60 235.3 175 65.7
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 4.9e-60 235.3 175 61.1
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 6.5e-60 235.0 175 65.1
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 6.5e-60 235.0 211 53.6
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.5e-60 235.0 175 62.9
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 6.5e-60 235.0 175 63.4
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 8.4e-60 234.6 176 63.6
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 8.4e-60 234.6 180 60.6
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-59 234.2 164 68.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.1e-59 234.2 181 63.5
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.4e-59 233.8 176 64.2
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.4e-59 233.8 168 67.3
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.9e-59 233.4 168 67.3
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.5e-59 233.0 171 63.2
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.5e-59 233.0 171 63.2
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.5e-59 233.0 175 61.7
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.5e-59 233.0 175 63.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.5e-59 233.0 175 63.4
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.2e-59 232.6 172 65.7
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.2e-59 232.6 174 64.4
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 3.2e-59 232.6 175 62.3
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.2e-59 232.6 167 64.1
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 5.5e-59 231.9 175 64.0
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 5.5e-59 231.9 175 64.0
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 5.5e-59 231.9 175 64.0
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 5.5e-59 231.9 175 64.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 7.1e-59 231.5 173 65.3
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.6e-58 230.3 175 63.4
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.6e-58 230.3 175 63.4
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.6e-58 230.3 175 61.7
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 3.5e-58 229.2 166 65.1
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 3.5e-58 229.2 175 63.4
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 4.6e-58 228.8 168 66.7
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 4.6e-58 228.8 171 61.4
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 6.0e-58 228.4 171 66.1
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 7.9e-58 228.0 169 67.5
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.3e-57 227.3 171 64.3
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.3e-57 227.3 197 59.4
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-57 227.3 166 66.9
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.8e-57 226.9 175 62.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.3e-57 226.5 168 66.1
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 3.0e-57 226.1 175 64.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.0e-57 226.1 171 61.4
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 6.7e-57 224.9 180 62.8
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.7e-56 221.9 153 69.3
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.3e-55 220.7 160 68.8
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.6e-55 220.3 165 63.6
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.6e-55 220.3 175 60.6
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 4.8e-55 218.8 183 58.5
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 6.3e-55 218.4 178 60.1
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.4e-54 217.2 170 61.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.8e-54 216.9 175 59.4
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.8e-54 216.9 177 58.8
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.4e-54 216.5 169 60.9
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 3.1e-54 216.1 170 63.5
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 3.1e-54 216.1 178 60.7
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-54 216.1 175 59.4
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-54 216.1 175 59.4
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.3e-54 215.3 166 62.0
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 5.3e-54 215.3 175 58.9
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 5.3e-54 215.3 170 60.6
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 9.0e-54 214.5 173 56.6
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 4.5e-53 212.2 170 59.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.9e-52 209.5 173 54.9
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 5.0e-52 208.8 179 57.0
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.5e-52 208.4 162 58.6
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.2e-51 206.1 142 69.0
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.6e-50 203.8 160 60.6
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.7e-50 203.0 160 60.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-49 201.1 137 70.1
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.3e-49 200.7 169 56.8
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 2.3e-49 199.9 160 60.6
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.5e-48 197.2 169 56.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 9.7e-48 194.5 159 62.9
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-47 193.4 133 67.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-47 193.4 164 60.4
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 4.8e-47 192.2 172 54.7
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.8e-47 192.2 178 53.4
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.4e-46 190.7 175 53.1
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 5.0e-44 182.2 166 53.6
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.3e-39 165.2 153 56.2
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-37 161.0 122 65.6
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-34 151.0 150 52.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 5.7e-32 142.1 106 63.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.6e-29 134.0 102 59.8
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 2.1e-26 123.6 164 37.2
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.3e-23 114.4 169 35.5
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.4e-22 110.2 166 34.3
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.1e-22 109.8 74 68.9
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 4.5e-21 105.9 153 37.3
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.6e-18 97.4 86 57.0
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.7e-18 96.7 146 34.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 9.8e-16 88.2 87 47.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.5e-11 74.3 146 33.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.0e-09 68.2 47 59.6
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.0e-09 68.2 73 49.3
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.0e-09 68.2 73 49.3
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 2.3e-09 67.0 63 55.6


User provided reference genes

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