Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 9.5e-104 380.2 192 100.0
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 9.6e-88 327.0 193 87.6
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 1.2e-82 310.1 184 86.4
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 2.3e-81 305.8 184 86.4
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 4.3e-80 301.6 189 79.4
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 6.0e-74 281.2 181 75.7
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 1.3e-71 273.5 187 71.7
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 1.6e-71 273.1 184 71.7
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 1.5e-69 266.5 181 74.6
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 3.4e-69 265.4 182 73.1
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 2.9e-68 262.3 179 73.7
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 2.9e-68 262.3 181 72.4
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 4.9e-68 261.5 180 69.4
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 6.5e-68 261.2 182 73.1
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 8.4e-68 260.8 172 73.3
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.5e-67 259.2 186 68.8
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 3.2e-67 258.8 185 70.3
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 3.5e-66 255.4 186 70.4
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 6.0e-66 254.6 193 66.3
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 3.0e-65 252.3 188 69.1
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 3.0e-65 252.3 179 72.6
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 5.1e-65 251.5 166 73.5
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 6.7e-65 251.1 167 73.7
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 6.7e-65 251.1 185 68.6
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 8.7e-65 250.8 183 68.9
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 2.5e-64 249.2 179 67.6
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 3.3e-64 248.8 176 69.9
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 4.3e-64 248.4 175 69.7
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 5.7e-64 248.1 187 66.3
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 7.4e-64 247.7 167 72.5
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 1.3e-63 246.9 188 66.0
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 1.6e-63 246.5 169 71.0
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 1.6e-63 246.5 167 73.1
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 1.6e-63 246.5 177 67.8
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 2.2e-63 246.1 172 68.6
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 2.2e-63 246.1 166 75.9
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 2.2e-63 246.1 160 73.8
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 6.3e-63 244.6 169 69.2
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 6.3e-63 244.6 192 65.6
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 8.2e-63 244.2 166 71.1
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 8.2e-63 244.2 182 67.6
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 1.4e-62 243.4 171 68.4
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.4e-62 242.7 169 69.2
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 2.4e-62 242.7 170 70.6
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 3.1e-62 242.3 183 61.7
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 4.1e-62 241.9 169 68.6
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 5.3e-62 241.5 184 66.8
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 6.9e-62 241.1 179 70.4
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 1.2e-61 240.4 184 67.9
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 2.0e-61 239.6 158 71.5
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 2.0e-61 239.6 187 65.8
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 2.6e-61 239.2 188 68.1
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 4.5e-61 238.4 158 73.4
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 5.9e-61 238.0 169 69.8
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 5.9e-61 238.0 166 71.1
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 1.3e-60 236.9 169 69.8
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 2.2e-60 236.1 171 66.7
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 3.8e-60 235.3 172 68.0
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 8.5e-60 234.2 167 71.3
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 8.5e-60 234.2 172 67.4
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 1.1e-59 233.8 188 67.6
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 7.2e-59 231.1 171 68.4
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 1.2e-58 230.3 172 66.9
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 4.6e-58 228.4 153 71.9
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 4.6e-58 228.4 178 65.2
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 6.7e-57 224.6 148 73.0
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 1.1e-56 223.8 147 76.2
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 2.5e-56 222.6 177 62.1
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 4.3e-56 221.9 163 65.0
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 5.7e-56 221.5 163 64.4
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 7.4e-56 221.1 179 60.3
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 1.7e-55 219.9 206 59.2
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 2.2e-55 219.5 163 64.4
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 2.2e-55 219.5 163 64.4
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 4.8e-55 218.4 163 63.8
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 4.8e-55 218.4 163 63.8
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 6.3e-55 218.0 178 61.8
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 6.3e-55 218.0 175 66.3
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 6.3e-55 218.0 163 63.8
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 6.3e-55 218.0 184 60.9
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 8.2e-55 217.6 152 74.3
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 1.8e-54 216.5 184 63.0
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 4.1e-54 215.3 172 61.6
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 6.9e-54 214.5 165 61.2
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 1.2e-53 213.8 157 66.9
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 2.6e-53 212.6 165 60.6
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 1.3e-52 210.3 162 63.0
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 3.8e-52 208.8 166 63.3
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 5.0e-52 208.4 137 75.2
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 6.5e-52 208.0 234 48.7
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 2.6e-48 196.1 131 71.0
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 4.4e-48 195.3 137 70.8
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 8.2e-47 191.0 125 72.0
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 9.4e-43 177.6 188 55.3
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 1.0e-41 174.1 186 51.1
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 8.2e-39 164.5 126 64.3
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 7.0e-38 161.4 160 58.1
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.2e-36 156.4 146 53.4
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 6.5e-36 154.8 168 54.8
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 9.1e-30 134.4 94 72.3
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 1.9e-27 126.7 83 68.7
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 4.2e-27 125.6 151 46.4
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 1.5e-24 117.1 87 63.2
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 1.6e-21 107.1 125 46.4
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 2.0e-21 106.7 192 35.4
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 4.5e-21 105.5 165 44.2
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 3.8e-20 102.4 75 62.7
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 3.6e-18 95.9 75 64.0
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 6.8e-17 91.7 139 37.4
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 7.0e-14 81.6 67 59.7
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 3.4e-08 62.8 40 75.0
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.4e-06 56.6 79 40.5


User provided reference genes

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