Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 9.9e-108 393.7 227 100.0
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 6.2e-86 321.2 218 83.9
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 6.2e-86 321.2 218 83.5
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 8.1e-86 320.9 218 84.4
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 1.3e-78 297.0 218 73.4
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 6.2e-78 294.7 219 73.5
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 6.5e-67 258.1 218 67.0
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 3.7e-62 242.3 223 59.6
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 8.2e-62 241.1 219 60.3
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 4.1e-61 238.8 221 58.8
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 6.9e-61 238.0 223 57.8
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 1.5e-60 236.9 212 59.4
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 7.7e-60 234.6 221 58.8
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 5.0e-59 231.9 223 57.4
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 2.7e-57 226.1 220 55.0
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 2.7e-57 226.1 216 58.3
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 7.9e-57 224.6 215 59.1
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 1.5e-55 220.3 221 53.8
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 1.5e-55 220.3 219 62.1
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 1.5e-55 220.3 221 54.8
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 1.5e-55 220.3 220 54.1
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 1.5e-55 220.3 230 53.0
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 4.3e-55 218.8 219 55.7
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 4.3e-55 218.8 219 54.8
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 7.4e-55 218.0 219 53.4
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 2.2e-54 216.5 218 54.1
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 2.8e-54 216.1 223 52.5
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 8.2e-54 214.5 212 52.8
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 1.1e-53 214.2 223 52.0
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 1.1e-53 214.2 225 52.0
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 3.1e-53 212.6 225 52.4
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 3.1e-53 212.6 225 52.4
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 5.3e-53 211.8 227 51.5
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 1.2e-52 210.7 226 54.0
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 2.0e-52 209.9 216 52.3
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 3.4e-52 209.1 225 52.4
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 2.2e-51 206.5 217 50.7
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 2.9e-51 206.1 220 50.0
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 2.9e-51 206.1 222 51.8
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 2.9e-51 206.1 209 51.7
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 5.0e-51 205.3 221 49.3
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 5.0e-51 205.3 206 53.9
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 8.5e-51 204.5 221 50.2
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 1.9e-50 203.4 221 48.9
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 3.2e-50 202.6 220 49.1
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 7.2e-50 201.4 226 48.2
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 9.4e-50 201.1 211 49.3
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 1.6e-49 200.3 208 51.9
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 1.6e-49 200.3 207 50.7
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 1.6e-49 200.3 225 51.1
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 2.7e-49 199.5 222 52.3
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 6.1e-49 198.4 224 51.8
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 6.1e-49 198.4 220 50.9
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 1.4e-48 197.2 207 49.3
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 1.8e-48 196.8 210 50.5
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 5.1e-48 195.3 222 49.5
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 1.5e-47 193.7 234 51.3
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 2.0e-47 193.4 206 51.5
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 3.3e-47 192.6 207 48.3
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 3.3e-47 192.6 208 50.0
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 4.4e-47 192.2 221 51.6
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 5.7e-47 191.8 222 50.9
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 1.3e-46 190.7 226 49.6
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 6.3e-46 188.3 222 51.4
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 6.3e-46 188.3 210 47.1
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 8.2e-46 188.0 221 50.2
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 1.1e-45 187.6 211 50.2
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 1.8e-45 186.8 217 49.3
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 2.4e-45 186.4 222 50.9
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 2.4e-45 186.4 206 48.1
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 5.3e-45 185.3 228 45.6
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 7.0e-45 184.9 234 46.6
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 7.0e-45 184.9 220 47.3
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 1.2e-44 184.1 212 48.6
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 2.0e-44 183.3 209 47.8
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 4.5e-44 182.2 207 47.3
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 6.5e-43 178.3 224 45.1
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 2.0e-39 166.8 210 42.9
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 2.6e-39 166.4 222 42.8
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 1.7e-38 163.7 219 45.2
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 8.2e-38 161.4 229 43.2
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 2.4e-37 159.8 135 60.7
Os05g0251400 Oryza sativa ssp. japonica HOM05D007546 ORTHO05D009542 3.5e-36 156.0 203 44.8
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 5.9e-36 155.2 175 52.0
HPP92_010632 Vanilla planifolia HOM05D007546 ORTHO05D009542 5.9e-36 155.2 222 41.9
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 1.0e-35 154.5 170 48.8
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 1.1e-34 151.0 168 47.0
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 3.2e-34 149.4 171 50.3
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 5.5e-34 148.7 173 45.1
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 1.2e-33 147.5 139 56.8
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.6e-33 147.1 178 46.1
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 5.2e-32 142.1 178 45.5
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 6.8e-32 141.7 143 52.4
Zm00001eb132020 Zea mays HOM05D007546 ORTHO05D009542 6.8e-32 141.7 203 41.9
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 5.7e-31 138.7 129 57.4
Glyma.19G155400 Glycine max HOM05D007546 ORTHO05D009542 3.3e-18 96.3 103 44.7
SalBow4G3151 Salvia bowleyana HOM05D007546 ORTHO05D009542 7.8e-12 75.1 57 66.7
Mapoly0002s0121 Marchantia polymorpha HOM05D007546 ORTHO05D009542 1.0e-11 74.7 182 31.3
SalBow8G3203 Salvia bowleyana HOM05D007546 ORTHO05D009542 5.0e-11 72.4 57 64.9
CSS0034697 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 1.0e-08 64.7 85 44.7
SalBow1G5735 Salvia bowleyana HOM05D007546 ORTHO05D009542 1.8e-08 63.9 57 61.4


User provided reference genes

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