Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 0.0e+00 1581.6 863 100.0
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 3.4e-302 1041.6 896 67.4
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 2.8e-251 872.5 881 59.7
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 3.7e-248 862.1 893 58.7
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 9.2e-239 830.9 880 56.8
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 8.0e-235 817.8 951 54.4
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 9.8e-233 810.8 951 54.5
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 4.5e-68 263.8 462 38.7
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 6.5e-67 260.0 546 34.2
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 1.9e-66 258.5 454 38.5
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 1.2e-65 255.8 890 28.4
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 2.5e-63 248.1 459 35.7
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 3.1e-61 241.1 315 42.2
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 2.0e-60 238.4 333 39.9
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 7.2e-58 229.9 418 36.1
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 1.2e-57 229.2 304 42.8
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 1.5e-55 222.2 385 35.8
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 1.3e-54 219.2 450 34.9
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 2.2e-54 218.4 309 39.5
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 1.1e-53 216.1 304 39.8
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 4.5e-52 210.7 376 36.7
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 1.0e-51 209.5 391 35.0
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 1.3e-51 209.1 516 30.8
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 2.5e-50 204.9 366 38.8
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 9.4e-50 203.0 381 34.6
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 2.1e-49 201.8 480 31.5
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 6.1e-49 200.3 340 35.3
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 1.4e-48 199.1 320 34.4
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 2.6e-47 194.9 295 39.0
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 1.7e-46 192.2 284 37.7
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 2.8e-46 191.4 285 38.2
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 2.8e-46 191.4 252 41.7
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 8.2e-46 189.9 293 37.9
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 1.4e-45 189.1 359 34.0
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 1.4e-45 189.1 372 31.5
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 2.4e-45 188.3 359 34.0
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 2.6e-44 184.9 501 29.7
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 2.6e-44 184.9 413 31.2
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 1.7e-43 182.2 405 31.1
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 1.4e-40 172.6 226 40.7
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 2.8e-38 164.9 298 34.6
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 3.1e-37 161.4 315 34.0
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 1.7e-35 155.6 370 33.2
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 3.0e-32 144.8 312 32.1
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 3.4e-31 141.4 140 49.3
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 2.7e-28 131.7 303 29.7
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 1.1e-26 126.3 198 37.4
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 1.0e-19 103.2 300 28.7
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 8.6e-19 100.1 765 26.5
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 1.5e-18 99.4 171 33.9
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 8.0e-17 93.6 444 25.0
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 1.1e-13 83.2 304 25.3
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.5e-10 72.0 144 33.3
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 3.3e-10 71.6 187 27.3
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 3.6e-09 68.2 382 22.3
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 8.0e-09 67.0 424 22.2
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 1.2e-07 63.2 340 22.4
PGSC0003DMG400002182 Solanum tuberosum HOM05D003159 ORTHO05D003780 3.7e-06 58.2 44 68.2


User provided reference genes

Program Settings