Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.1e-169 599.7 287 100.0
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 4.2e-164 581.3 287 97.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.8e-162 575.9 287 95.8
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.8e-162 575.9 287 95.8
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 6.7e-162 573.9 287 95.5
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.2e-158 563.1 289 94.1
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 7.5e-153 543.9 287 89.2
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 9.7e-153 543.5 287 89.2
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 6.3e-152 540.8 287 88.2
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 8.2e-152 540.4 288 89.2
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.4e-151 539.7 293 88.1
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 9.1e-151 537.0 289 89.6
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.0e-150 535.8 295 87.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.7e-150 535.4 287 88.5
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 2.7e-150 535.4 286 88.8
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 2.7e-150 535.4 290 88.3
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.5e-150 535.0 294 87.4
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 7.7e-150 533.9 288 88.2
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 7.7e-150 533.9 301 85.0
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.0e-149 533.5 292 86.3
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.3e-149 533.1 285 88.8
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 2.2e-149 532.3 299 86.0
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.8e-149 531.6 295 85.8
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 3.8e-149 531.6 285 88.4
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 6.5e-149 530.8 285 87.7
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 6.5e-149 530.8 266 92.9
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 6.5e-149 530.8 290 86.9
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 8.5e-149 530.4 298 84.6
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.1e-148 530.0 286 87.1
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.5e-148 529.6 294 85.4
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.9e-148 529.3 288 86.8
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.5e-148 528.9 290 85.5
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.2e-148 528.1 287 88.2
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 5.5e-148 527.7 290 85.2
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 5.5e-148 527.7 285 88.4
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 5.5e-148 527.7 298 84.6
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 5.5e-148 527.7 275 89.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 7.2e-148 527.3 287 87.5
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.2e-147 526.6 294 86.1
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.2e-147 526.6 294 86.1
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.2e-147 526.6 293 84.3
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.6e-147 526.2 293 85.0
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 2.7e-147 525.4 294 84.4
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 3.6e-147 525.0 292 85.3
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.6e-147 525.0 291 85.6
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 4.7e-147 524.6 292 85.3
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 4.7e-147 524.6 292 85.3
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 4.7e-147 524.6 292 85.3
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 8.0e-147 523.9 290 87.2
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.0e-146 523.5 287 86.8
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.0e-146 523.5 288 84.4
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.0e-146 523.5 286 85.7
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-146 523.1 291 84.9
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.4e-146 523.1 293 84.3
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.8e-146 522.7 266 91.7
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.8e-146 522.7 289 85.8
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.8e-146 522.7 285 87.4
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 2.3e-146 522.3 292 84.9
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 2.3e-146 522.3 292 84.9
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.3e-146 522.3 289 86.5
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.0e-146 521.9 292 85.3
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 3.0e-146 521.9 275 87.3
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 4.0e-146 521.5 287 85.7
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.0e-146 521.5 289 85.8
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 4.0e-146 521.5 298 82.9
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 6.8e-146 520.8 289 85.8
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 8.8e-146 520.4 289 85.1
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 8.8e-146 520.4 289 85.5
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 8.8e-146 520.4 288 85.1
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.2e-145 520.0 289 85.1
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.2e-145 520.0 289 85.5
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.2e-145 520.0 289 85.1
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 2.0e-145 519.2 302 83.4
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.0e-145 519.2 283 85.9
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 2.0e-145 519.2 266 90.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.6e-145 518.8 297 84.2
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.6e-145 518.8 290 85.9
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 2.6e-145 518.8 289 85.1
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 4.4e-145 518.1 287 85.4
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.4e-145 518.1 291 84.9
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 7.5e-145 517.3 296 83.8
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 9.8e-145 516.9 290 85.2
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.7e-144 516.2 285 84.9
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.7e-144 516.2 293 83.3
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.7e-144 516.2 296 83.1
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.7e-144 516.2 288 84.7
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.8e-144 515.4 295 83.4
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.7e-144 515.0 290 83.8
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.8e-144 514.6 289 84.4
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.8e-144 514.6 295 82.7
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 6.3e-144 514.2 296 83.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.4e-143 513.1 285 84.2
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.4e-143 513.1 296 83.1
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.4e-143 513.1 296 81.1
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.4e-143 513.1 296 81.1
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.8e-143 512.7 290 81.7
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.8e-143 512.7 296 82.4
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.4e-143 512.3 290 83.4
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 3.1e-143 511.9 266 88.7
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.1e-143 511.5 291 83.8
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.0e-142 509.2 285 84.2
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 2.0e-142 509.2 259 91.5
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 3.5e-142 508.4 291 83.5
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 3.5e-142 508.4 266 89.1
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.0e-141 506.9 296 80.7
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 4.2e-140 501.5 298 80.5
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.8e-139 498.8 287 82.2
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.8e-139 498.8 287 82.2
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.1e-139 497.7 314 75.5
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 6.1e-139 497.7 288 80.6
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 3.4e-137 491.9 266 84.6
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.2e-134 483.4 346 68.8
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 4.4e-129 464.9 289 75.4
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.6e-126 456.4 289 74.7
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.7e-125 453.0 282 73.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 5.0e-125 451.4 274 75.2
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 8.6e-125 450.7 268 78.0
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 5.6e-124 448.0 282 72.7
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.6e-123 445.3 282 72.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.1e-122 442.2 281 72.6
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.4e-114 416.8 271 69.4
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 6.8e-114 414.5 292 67.1
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 2.9e-112 409.1 280 69.6
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.4e-106 390.2 241 79.7
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.8e-98 363.2 194 87.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 4.0e-98 362.1 292 66.8
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 5.8e-97 358.2 295 64.7
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.3e-96 357.1 274 63.5
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.3e-96 357.1 192 87.5
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 2.9e-96 355.9 266 61.7
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 2.1e-91 339.7 257 61.5
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 2.7e-86 322.8 165 92.1
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.6e-81 306.2 290 56.2
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 7.1e-79 298.1 263 55.5
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 5.3e-74 282.0 147 91.2
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 9.0e-74 281.2 194 72.2
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 2.9e-64 249.6 133 89.5
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 9.4e-55 218.0 114 90.4
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.8e-53 213.8 113 88.5
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-49 201.1 113 85.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 3.5e-49 199.5 113 85.0
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.5e-47 193.4 120 77.5
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.1e-44 184.5 216 45.4
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 5.7e-44 182.2 253 41.9
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 6.8e-37 158.7 186 41.9
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.6e-30 136.3 93 69.9
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.9e-23 114.0 56 92.9
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.7e-19 100.9 76 65.8
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 4.1e-10 69.7 48 58.3
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 5.6e-07 59.3 35 68.6


User provided reference genes

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