Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 4.6e-99 364.8 213 100.0
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 3.9e-82 308.5 211 82.5
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 3.5e-75 285.4 214 78.0
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.3e-74 282.7 204 79.4
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.9e-73 279.6 204 78.9
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.0e-69 267.3 205 74.1
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 3.1e-47 192.6 209 51.7
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.6e-46 190.3 202 55.4
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.6e-46 190.3 217 53.5
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 2.7e-46 189.5 212 50.9
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 5.9e-46 188.3 221 52.9
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.5e-44 183.7 209 53.1
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 7.2e-44 181.4 204 52.0
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 9.4e-44 181.0 201 54.7
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 9.4e-44 181.0 208 52.9
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.2e-43 180.6 207 51.7
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.2e-43 180.6 219 52.1
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.2e-43 180.6 210 50.5
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.0e-42 177.6 212 54.2
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 1.8e-42 176.8 208 50.5
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 3.0e-42 176.0 215 51.6
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.0e-42 175.6 204 52.5
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 5.2e-42 175.3 204 52.9
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 8.8e-42 174.5 212 50.5
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.2e-41 174.1 204 52.9
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.2e-41 174.1 209 53.1
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 9.8e-41 171.0 204 52.5
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 1.3e-40 170.6 208 49.5
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 8.3e-40 167.9 201 49.3
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.4e-39 167.2 204 51.5
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 1.4e-39 167.2 201 48.8
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 3.1e-39 166.0 135 73.3
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 2.0e-38 163.3 206 48.5
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 7.7e-38 161.4 203 49.8
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.7e-37 160.2 208 47.1
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.2e-37 159.8 209 48.8
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 2.9e-37 159.5 200 47.5
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 5.0e-37 158.7 194 49.5
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 5.0e-37 158.7 206 49.5
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 5.0e-37 158.7 203 49.3
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 1.1e-36 157.5 206 45.1
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.5e-36 157.1 200 47.5
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 7.2e-36 154.8 202 48.5
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 2.1e-35 153.3 171 52.0
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 2.1e-35 153.3 224 42.9
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 2.1e-35 153.3 213 46.0
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 2.7e-35 152.9 205 47.3
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 6.1e-35 151.8 208 44.7
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 6.1e-35 151.8 188 48.4
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.0e-34 151.0 214 46.3
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 2.3e-34 149.8 203 47.8
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 3.0e-34 149.4 211 45.0
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 4.0e-34 149.1 207 45.9
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 5.2e-34 148.7 205 43.9
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.2e-33 147.5 211 46.0
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 1.2e-33 147.5 206 47.6
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 5.7e-33 145.2 207 44.9
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 7.5e-33 144.8 172 48.8
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.8e-33 144.4 212 42.0
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.8e-33 144.4 212 42.0
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.7e-32 143.7 203 42.9
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.7e-32 143.7 207 45.9
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.7e-32 143.7 213 44.1
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 2.2e-32 143.3 203 43.8
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 2.8e-32 142.9 205 46.3
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 3.7e-32 142.5 207 47.8
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 3.7e-32 142.5 195 46.2
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 6.3e-32 141.7 203 45.8
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 6.3e-32 141.7 198 47.5
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 6.3e-32 141.7 206 45.6
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 6.3e-32 141.7 211 46.0
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 8.3e-32 141.4 206 45.6
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.1e-31 141.0 202 43.1
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.4e-31 140.6 197 45.7
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.4e-31 140.6 206 45.6
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.8e-31 140.2 206 45.6
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.8e-31 140.2 211 44.5
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 1.8e-31 140.2 175 49.7
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.4e-31 139.8 204 45.6
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 5.4e-31 138.7 209 45.5
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 7.0e-31 138.3 202 42.6
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 9.2e-31 137.9 204 43.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 1.2e-30 137.5 204 43.6
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 1.2e-30 137.5 207 44.9
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 1.2e-30 137.5 198 46.5
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 1.6e-30 137.1 198 44.4
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 1.6e-30 137.1 203 43.3
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 1.6e-30 137.1 196 46.4
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.6e-30 137.1 204 45.1
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 2.0e-30 136.7 207 44.4
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 2.0e-30 136.7 207 44.4
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 2.0e-30 136.7 207 44.9
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 5.9e-30 135.2 209 43.1
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 7.7e-30 134.8 209 41.1
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 7.7e-30 134.8 204 44.1
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 1.0e-29 134.4 214 44.4
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.7e-29 133.7 198 44.4
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 3.8e-29 132.5 198 44.4
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.5e-28 130.6 177 46.3
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.5e-28 130.6 205 43.4
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 4.3e-28 129.0 204 41.7
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.5e-28 127.9 210 40.5
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.6e-27 127.1 212 42.0
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.6e-27 127.1 220 42.7
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 2.1e-27 126.7 204 41.2
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 2.1e-27 126.7 207 41.1
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 2.1e-27 126.7 213 41.8
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 2.8e-27 126.3 245 39.6
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 2.3e-26 123.2 255 35.7
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 9.2e-23 111.3 203 40.4
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 2.0e-22 110.2 294 34.4
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 8.9e-18 94.7 90 58.9
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.7e-16 90.5 172 39.0
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.4e-15 86.7 99 51.5
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 3.5e-14 82.8 204 31.9
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.0e-13 81.3 100 49.0
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 2.3e-13 80.1 77 53.2
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 6.6e-13 78.6 84 52.4
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 7.3e-12 75.1 67 61.2
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 6.2e-11 72.0 114 42.1
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 1.8e-10 70.5 106 41.5
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 2.3e-10 70.1 221 31.2
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 3.2e-07 59.7 44 68.2
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 7.1e-07 58.5 77 44.2


User provided reference genes

Program Settings