Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 1.8e-185 653.3 420 100.0
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 2.5e-110 403.7 251 84.5
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 2.0e-107 394.0 250 81.6
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 9.8e-107 391.7 251 82.5
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 6.3e-106 389.0 250 80.4
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 1.1e-92 345.1 445 61.8
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 8.9e-92 342.0 444 60.8
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 5.4e-89 332.8 418 63.6
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 2.1e-88 330.9 447 60.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 7.3e-86 322.4 431 62.2
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.7e-85 319.7 444 58.6
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 1.8e-84 317.8 439 60.4
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.8e-84 317.8 352 66.8
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 8.9e-84 315.5 441 58.7
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 2.0e-83 314.3 418 63.2
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 7.5e-83 312.4 418 62.7
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 1.7e-82 311.2 373 66.5
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 3.7e-82 310.1 416 58.2
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 1.9e-81 307.8 450 58.4
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.7e-79 301.2 431 59.6
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 2.3e-79 300.8 412 62.4
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 5.1e-79 299.7 441 57.4
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 4.3e-78 296.6 416 58.4
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 7.3e-78 295.8 444 57.4
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 1.1e-76 292.0 439 58.5
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 1.8e-76 291.2 444 57.9
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 4.0e-76 290.0 423 58.6
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 5.8e-75 286.2 252 63.9
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.8e-75 286.2 391 62.1
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 7.6e-75 285.8 437 56.8
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 2.2e-74 284.3 391 62.1
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 4.9e-74 283.1 391 62.1
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 6.4e-74 282.7 259 57.5
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 1.4e-73 281.6 418 57.4
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 1.9e-73 281.2 414 58.0
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 1.9e-73 281.2 418 56.7
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 9.2e-73 278.9 442 57.7
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 1.2e-72 278.5 387 59.7
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 4.6e-72 276.6 387 59.2
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 3.9e-71 273.5 373 61.1
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 2.5e-70 270.8 432 55.1
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 5.6e-70 269.6 399 59.9
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 7.3e-70 269.2 419 43.2
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 7.3e-70 269.2 376 45.7
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 7.3e-70 269.2 259 57.9
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 9.6e-70 268.9 353 46.5
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 9.6e-70 268.9 353 46.5
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 2.1e-69 267.7 345 63.5
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 6.2e-69 266.2 356 63.8
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 8.1e-69 265.8 253 58.9
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 2.6e-67 260.8 358 53.9
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 4.4e-67 260.0 359 59.9
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.8e-66 256.9 250 58.4
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 4.9e-66 256.5 397 43.3
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.4e-65 253.1 391 59.3
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 2.1e-64 251.1 345 58.3
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.0e-63 248.8 240 57.5
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 2.3e-63 247.7 337 60.8
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.9e-63 246.9 354 60.7
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 8.7e-63 245.7 343 58.3
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.9e-62 244.6 318 65.4
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 9.6e-62 242.3 233 57.5
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.1e-60 238.8 421 54.4
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 1.4e-60 238.4 252 55.2
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.8e-60 238.0 267 49.4
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 6.9e-60 236.1 367 58.3
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 9.0e-60 235.7 180 62.2
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 2.0e-59 234.6 168 66.7
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 5.8e-59 233.0 383 54.6
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 4.9e-58 229.9 206 54.9
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 4.9e-58 229.9 177 60.5
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 2.7e-56 224.2 363 59.2
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 3.0e-55 220.7 351 56.1
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 8.1e-53 212.6 213 51.2
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 2.2e-50 204.5 227 51.1
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.4e-49 201.8 201 50.2
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 1.3e-45 188.7 140 64.3
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.7e-42 178.3 144 55.6
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.1e-41 175.6 169 53.8
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 7.4e-38 162.9 113 65.5
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 2.8e-37 161.0 183 45.4
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 8.2e-37 159.5 241 65.6
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 1.6e-32 145.2 92 72.8
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 1.4e-31 142.1 370 41.4
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.3e-31 141.4 352 50.9
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 4.1e-28 130.6 428 42.8
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 1.5e-27 128.6 204 75.5
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 1.1e-25 122.5 153 40.5
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 1.0e-23 115.9 167 38.3
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.8e-23 115.2 87 65.5
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.4e-20 105.5 102 49.0
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.4e-20 105.5 102 49.0
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.0e-18 99.4 164 40.2
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 5.0e-18 97.1 67 65.7
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 2.5e-17 94.7 104 45.2
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 2.5e-17 94.7 104 45.2
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 2.7e-16 91.3 213 56.3
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 9.7e-14 82.8 109 37.6
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 4.7e-08 63.9 104 33.7
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 6.1e-08 63.5 144 26.4
Solyc01g060250.2 Solanum lycopersicum HOM05D002444 ORTHO05D009235 1.2e-06 59.3 71 60.6
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 4.4e-06 57.4 174 23.0
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 5.7e-06 57.0 137 25.5
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 5.7e-06 57.0 150 28.7
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 9.7e-06 56.2 137 25.5
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 9.7e-06 56.2 137 25.5


User provided reference genes

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