Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1918.1 Capsicum annuum HOM05D010623 ORTHO05D012718 6.6e-248 860.5 529 100.0
Nitab4.5_0006512g0040 Nicotiana tabacum HOM05D010623 ORTHO05D012718 4.8e-129 465.7 538 64.9
PGSC0003DMG400025202 Solanum tuberosum HOM05D010623 ORTHO05D012718 6.9e-128 461.8 520 59.0
Sopen08g013570 Solanum pennellii HOM05D010623 ORTHO05D012718 3.5e-116 422.9 515 55.9
Nitab4.5_0000507g0020 Nicotiana tabacum HOM05D010623 ORTHO05D012718 4.6e-116 422.5 517 51.6
Peaxi162Scf01343g00112 Petunia axillaris HOM05D010623 ORTHO05D012718 3.3e-114 416.4 552 57.8
Solyc08g044390.1 Solanum lycopersicum HOM05D010623 ORTHO05D012718 1.1e-112 411.4 515 55.0
Oeu060696.1 Olea europaea HOM05D010623 ORTHO05D012718 5.5e-85 319.3 306 60.1
DCAR_025007 Daucus carota HOM05D010623 ORTHO05D012718 2.2e-70 270.8 315 50.2
Migut.B01424 Erythranthe guttata HOM05D010623 ORTHO05D012718 8.5e-70 268.9 315 53.0
Dinv43969 Davidia involucrata HOM05D010623 ORTHO05D012718 3.6e-68 263.5 265 51.7
vmacro13591 Vaccinium macrocarpon HOM05D010623 ORTHO05D012718 8.0e-68 262.3 296 51.7
SGA_v2.0_scaffold98G29380 Striga asiatica HOM05D010623 ORTHO05D012718 8.8e-67 258.8 317 49.5
Lj7P559T50 Lonicera japonica HOM05D010623 ORTHO05D012718 2.0e-66 257.7 267 54.3
Rhsim07G0046900 Rhododendron simsii HOM05D010623 ORTHO05D012718 2.2e-65 254.2 300 51.3
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 3.6e-52 210.3 305 39.7
Nn3g19189 Nelumbo nucifera HOM05D010623 ORTHO05D012718 2.3e-51 207.6 306 41.2
Actinidia31739 Actinidia chinensis HOM05D010623 ORTHO05D012718 6.6e-30 136.3 124 55.6
Actinidia10538 Actinidia chinensis HOM05D010623 ORTHO05D012718 5.6e-21 106.7 125 47.2
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 1.1e-19 102.4 310 30.6
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 2.0e-18 98.2 293 30.4
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 4.4e-18 97.1 317 26.5
Lalb_Chr07g0184981 Lupinus albus HOM05D006072 ORTHO05D007363 4.4e-18 97.1 279 29.0
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 5.8e-18 96.7 303 27.7
Nn3g18504 Nelumbo nucifera HOM05D006072 ORTHO05D007363 2.9e-17 94.4 301 29.6
Rhsim09G0083400 Rhododendron simsii HOM05D006072 ORTHO05D007363 2.9e-17 94.4 282 29.4
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 4.9e-17 93.6 280 28.9
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 6.4e-17 93.2 293 28.7
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 1.9e-16 91.7 294 28.6
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 1.9e-16 91.7 325 28.9
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 2.4e-16 91.3 332 26.8
Cc01_g19360 Coffea canephora HOM05D006072 ORTHO05D007363 2.4e-16 91.3 272 30.5
DCAR_023269 Daucus carota HOM05D006072 ORTHO05D007363 2.4e-16 91.3 296 30.1
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 2.4e-16 91.3 291 27.8
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 2.4e-16 91.3 291 27.8
TAR622G0191 Trochodendron aralioides HOM05D006072 ORTHO05D007363 2.4e-16 91.3 305 29.8
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 3.2e-16 90.9 285 27.7
Gohir.D11G224600 Gossypium hirsutum HOM05D006072 ORTHO05D007363 4.2e-16 90.5 303 27.1
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 5.4e-16 90.1 310 27.1
Medtr4g075230 Medicago truncatula HOM05D006072 ORTHO05D007363 5.4e-16 90.1 294 27.6
Peaxi162Scf00641g00039 Petunia axillaris HOM05D006072 ORTHO05D007363 5.4e-16 90.1 298 29.5
Gorai.007G241900 Gossypium raimondii HOM05D006072 ORTHO05D007363 7.1e-16 89.7 303 26.7
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 7.1e-16 89.7 300 28.3
Lsat_1_v5_gn_3_92501 Lactuca sativa HOM05D006072 ORTHO05D007363 9.3e-16 89.4 298 27.2
Medtr8g091400 Medicago truncatula HOM05D006072 ORTHO05D007363 9.3e-16 89.4 278 28.4
Gohir.A11G199500 Gossypium hirsutum HOM05D006072 ORTHO05D007363 1.2e-15 89.0 303 26.7
CSS0004323 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 2.1e-15 88.2 281 29.2
CiPaw.03G138500 Carya illinoinensis HOM05D006072 ORTHO05D007363 2.1e-15 88.2 288 28.1
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 2.1e-15 88.2 303 26.7
Eucgr.H00590 Eucalyptus grandis HOM05D006072 ORTHO05D007363 3.5e-15 87.4 275 26.9
Oeu042642.1 Olea europaea HOM05D000154 ORTHO05D000092 3.5e-15 87.4 83 60.2
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 4.6e-15 87.0 299 29.1
Glyma.05G181300 Glycine max HOM05D006072 ORTHO05D007363 4.6e-15 87.0 295 27.1
VMungo0251G2066 Vigna mungo HOM05D006072 ORTHO05D007363 4.6e-15 87.0 301 26.6
Glyma.08G139000 Glycine max HOM05D006072 ORTHO05D007363 6.0e-15 86.7 282 27.0
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 6.0e-15 86.7 296 27.4
Lalb_Chr12g0203671 Lupinus albus HOM05D006072 ORTHO05D007363 7.8e-15 86.3 279 28.0
PGR083G2817 Punica granatum HOM05D006072 ORTHO05D007363 7.8e-15 86.3 286 28.0
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 2.3e-14 84.7 301 28.2
PGSC0003DMG400019330 Solanum tuberosum HOM05D006072 ORTHO05D007363 2.3e-14 84.7 294 29.6
Thecc.01G107000 Theobroma cacao HOM05D006072 ORTHO05D007363 2.3e-14 84.7 303 27.1
ATR0598G294 Amborella trichopoda HOM05D006072 ORTHO05D007363 5.1e-14 83.6 317 26.2
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 6.6e-14 83.2 285 27.4
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 6.6e-14 83.2 296 27.7
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 8.7e-14 82.8 308 26.3
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.5e-13 82.0 292 29.8
CSS0011017 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.5e-13 82.0 265 28.3
Oeu025733.1 Olea europaea HOM05D006072 ORTHO05D007363 1.9e-13 81.6 293 28.7
CAN.G1.46 Capsicum annuum HOM05D006072 ORTHO05D007363 2.5e-13 81.3 311 27.0
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 2.5e-13 81.3 294 25.9
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 2.5e-13 81.3 285 27.4
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 2.5e-13 81.3 285 29.8
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 5.6e-13 80.1 315 27.0
Sopen10g022790 Solanum pennellii HOM05D006072 ORTHO05D007363 5.6e-13 80.1 304 27.3
ECA246G2885 Erigeron canadensis HOM05D006072 ORTHO05D007363 7.3e-13 79.7 311 26.4
Cc02_g18000 Coffea canephora HOM05D006072 ORTHO05D007363 9.6e-13 79.3 264 29.2
Manes.12G138600 Manihot esculenta HOM05D006072 ORTHO05D007363 9.6e-13 79.3 311 27.7
Nitab4.5_0000876g0020 Nicotiana tabacum HOM05D006072 ORTHO05D007363 9.6e-13 79.3 282 29.1
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.3e-12 79.0 316 25.9
Gohir.A12G093200 Gossypium hirsutum HOM05D006072 ORTHO05D007363 1.3e-12 79.0 285 26.7
Nitab4.5_0004318g0070 Nicotiana tabacum HOM05D006072 ORTHO05D007363 1.6e-12 78.6 292 29.5
Rhsim09G0083300 Rhododendron simsii HOM05D006072 ORTHO05D007363 1.6e-12 78.6 299 28.1
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 2.1e-12 78.2 268 26.5
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 2.8e-12 77.8 265 24.9
Oeu007228.1 Olea europaea HOM05D006072 ORTHO05D007363 2.8e-12 77.8 276 28.6
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 2.8e-12 77.8 313 26.8
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 2.8e-12 77.8 302 27.5
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 3.6e-12 77.4 294 25.2
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 8.1e-12 76.3 223 26.5
ATR0598G249 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.4e-11 75.5 335 25.1
Nitab4.5_0006309g0060 Nicotiana tabacum HOM05D006072 ORTHO05D007363 1.4e-11 75.5 295 28.8
Sopen09g027060 Solanum pennellii HOM05D006072 ORTHO05D007363 1.8e-11 75.1 294 28.2
Dinv07032 Davidia involucrata HOM05D006072 ORTHO05D007363 3.1e-11 74.3 296 28.4
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 6.9e-11 73.2 236 23.7
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 6.9e-11 73.2 248 26.2
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 9.0e-11 72.8 312 24.7
Peaxi162Scf00003g00145 Petunia axillaris HOM05D006072 ORTHO05D007363 9.0e-11 72.8 312 27.2
GSVIVG01011561001 Vitis vinifera HOM05D006072 ORTHO05D007363 1.2e-10 72.4 293 27.0
Peaxi162Scf00003g00149 Petunia axillaris HOM05D006072 ORTHO05D007363 1.5e-10 72.0 316 25.9
MBI19_g02922_MAGBIO Magnolia biondii HOM05D006072 ORTHO05D007363 2.0e-10 71.6 284 25.4
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 2.0e-10 71.6 303 24.4
Lj1C912T6 Lonicera japonica HOM05D010623 ORTHO05D012718 3.4e-10 70.9 110 34.5
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 4.5e-10 70.5 312 26.3
Lsat_1_v5_gn_5_36701 Lactuca sativa HOM05D006072 ORTHO05D007363 5.8e-10 70.1 272 27.9
Migut.N01215 Erythranthe guttata HOM05D006072 ORTHO05D007363 9.9e-10 69.3 299 26.1
CAN.G3.7 Capsicum annuum HOM05D006072 ORTHO05D007363 2.2e-09 68.2 276 27.2
AUR62003481 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.2e-09 68.2 203 25.1
AUR62015493 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.9e-09 67.8 226 24.3
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 2.9e-09 67.8 292 25.3
Dinv12556 Davidia involucrata HOM05D006072 ORTHO05D007363 6.4e-09 66.6 161 30.4
SalBow4G0595 Salvia bowleyana HOM05D006072 ORTHO05D007363 1.9e-08 65.1 264 27.3
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 4.2e-08 63.9 305 24.9
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 7.1e-08 63.2 298 26.8
SGA_v2.0_scaffold55G19813 Striga asiatica HOM05D006072 ORTHO05D007363 7.1e-08 63.2 296 26.4
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 7.1e-08 63.2 307 24.8
SalBow3G0772 Salvia bowleyana HOM05D006072 ORTHO05D007363 9.3e-08 62.8 197 27.4
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.7e-07 61.2 178 24.7
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 2.7e-07 61.2 286 25.5
HanXRQChr17g0542941 Helianthus annuus HOM05D007205 ORTHO05D009175 3.5e-07 60.8 309 23.9
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 4.6e-07 60.5 140 32.9
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 1.0e-06 59.3 263 25.5
Dinv16779 Davidia involucrata HOM05D006072 ORTHO05D007363 1.8e-06 58.5 171 28.7
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 2.3e-06 58.2 322 25.5
Actinidia12426 Actinidia chinensis HOM05D006072 ORTHO05D007363 5.1e-06 57.0 290 26.6
ATR0598G193 Amborella trichopoda HOM05D006072 ORTHO05D007363 5.1e-06 57.0 161 26.7
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 8.7e-06 56.2 171 28.1
HPP92_004203 Vanilla planifolia HOM05D006072 ORTHO05D007363 8.7e-06 56.2 166 30.7


User provided reference genes

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