Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 7.5e-58 226.9 107 100.0
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.1e-53 213.0 107 93.5
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 1.2e-52 209.5 107 91.6
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 6.2e-52 207.2 107 91.6
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 3.9e-46 188.0 101 87.1
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 9.9e-42 173.3 106 75.5
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 4.9e-41 171.0 103 78.6
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 1.1e-40 169.9 103 77.7
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 1.4e-40 169.5 109 75.2
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 3.2e-40 168.3 102 74.5
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 7.1e-40 167.2 103 72.8
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 9.2e-40 166.8 112 68.8
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.2e-39 166.4 100 77.0
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 1.2e-39 166.4 110 70.0
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 1.2e-39 166.4 103 74.8
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 3.5e-39 164.9 102 75.5
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 4.6e-39 164.5 92 80.4
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 6.0e-39 164.1 102 74.5
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 7.8e-39 163.7 105 74.3
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 1.3e-38 162.9 110 67.3
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 1.3e-38 162.9 104 72.1
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 1.3e-38 162.9 92 79.3
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.3e-38 162.9 107 70.1
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 3.9e-38 161.4 105 71.4
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 5.1e-38 161.0 92 79.3
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.5e-37 159.5 105 69.5
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 1.9e-37 159.1 106 68.9
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 1.9e-37 159.1 106 68.9
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 1.9e-37 159.1 91 74.7
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 2.5e-37 158.7 98 70.4
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 2.5e-37 158.7 104 69.2
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 4.3e-37 157.9 104 71.2
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 9.6e-37 156.8 100 70.0
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 9.6e-37 156.8 105 69.5
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 1.6e-36 156.0 102 70.6
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 2.1e-36 155.6 105 66.7
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 2.8e-36 155.2 101 67.3
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 4.7e-36 154.5 93 73.1
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 6.2e-36 154.1 100 71.0
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 1.8e-35 152.5 105 64.8
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 4.0e-35 151.4 104 66.3
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 4.0e-35 151.4 123 60.2
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 5.2e-35 151.0 101 67.3
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 6.9e-35 150.6 103 68.0
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 9.0e-35 150.2 107 66.4
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 1.2e-34 149.8 107 64.5
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 2.6e-34 148.7 104 66.3
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 3.4e-34 148.3 104 65.4
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 9.9e-34 146.7 102 66.7
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 1.3e-33 146.4 93 66.7
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 1.3e-33 146.4 104 65.4
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 1.3e-33 146.4 104 63.5
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.2e-33 145.6 77 85.7
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 3.8e-33 144.8 77 88.3
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 4.9e-33 144.4 110 62.7
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 4.9e-33 144.4 101 67.3
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 4.9e-33 144.4 101 67.3
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 4.9e-33 144.4 77 85.7
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 2.4e-32 142.1 105 62.9
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 3.2e-32 141.7 107 64.5
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 4.2e-32 141.4 104 62.5
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 4.2e-32 141.4 107 62.6
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 7.1e-32 140.6 109 61.5
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 9.3e-32 140.2 81 80.2
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.6e-31 139.4 101 65.3
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 2.1e-31 139.0 101 61.4
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 2.7e-31 138.7 104 63.5
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.5e-31 138.3 101 65.3
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.5e-31 138.3 104 65.4
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 7.8e-31 137.1 77 76.6
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.0e-30 136.7 101 64.4
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 1.3e-30 136.3 109 60.6
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 5.1e-30 134.4 102 60.8
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 5.1e-30 134.4 139 48.9
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 8.7e-30 133.7 102 60.8
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 1.1e-29 133.3 105 59.0
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 2.5e-29 132.1 107 60.7
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 2.5e-29 132.1 96 62.5
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.3e-29 131.7 101 63.4
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 4.3e-29 131.3 105 60.0
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 4.3e-29 131.3 107 59.8
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 4.3e-29 131.3 75 81.3
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 7.3e-29 130.6 106 57.5
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 7.3e-29 130.6 100 59.0
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 7.3e-29 130.6 100 59.0
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-28 129.4 105 61.0
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 2.8e-28 128.6 107 59.8
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 6.2e-28 127.5 105 59.0
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 1.1e-27 126.7 94 60.6
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 1.8e-27 125.9 96 56.2
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 2.4e-27 125.6 76 73.7
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 2.4e-27 125.6 105 53.3
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 6.9e-27 124.0 119 51.3
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 9.0e-27 123.6 94 59.6
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 9.0e-27 123.6 75 72.0
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 1.5e-26 122.9 119 50.4
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 1.5e-26 122.9 119 50.4
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.5e-26 122.9 88 64.8
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 2.0e-26 122.5 99 52.5
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 3.4e-26 121.7 126 51.6
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 5.8e-26 120.9 105 57.1
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 9.9e-26 120.2 100 59.0
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 9.9e-26 120.2 85 60.0
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 1.7e-25 119.4 86 60.5
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 4.9e-25 117.9 74 70.3
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 6.4e-25 117.5 118 50.0
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 6.4e-25 117.5 127 48.8
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 4.2e-24 114.8 111 50.5
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 5.4e-24 114.4 71 69.0
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 1.6e-23 112.8 95 50.5
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 2.1e-23 112.5 69 75.4
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 5.1e-22 107.8 69 68.1
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 5.1e-22 107.8 76 60.5
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 3.3e-21 105.1 71 63.4
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 7.4e-21 104.0 67 71.6
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 4.8e-20 101.3 70 65.7
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 6.2e-20 100.9 70 65.7
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 3.1e-19 98.6 74 62.2
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 9.0e-19 97.1 77 57.1
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 2.0e-18 95.9 78 57.7
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 4.2e-16 88.2 119 40.3
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 2.7e-15 85.5 90 42.2
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 2.3e-14 82.4 53 71.7
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 2.1e-12 75.9 40 82.5
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 3.1e-11 72.0 57 57.9
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 5.8e-10 67.8 37 78.4
CDE11G0759 Ceratophyllum demersum HOM05D006227 ORTHO05D129109 1.3e-06 56.6 59 49.2
RcHm_v2.0_Chr4g0411551 Rosa chinensis HOM05D000001 ORTHO05D000003 3.9e-06 55.1 30 80.0


User provided reference genes

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