Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.1e-51 206.5 110 100.0
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.5e-45 186.0 110 91.8
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.8e-43 179.1 110 87.3
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 87.4
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 87.4
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 87.4
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 3.5e-42 174.9 110 86.4
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.8e-39 165.2 110 81.8
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 6.2e-39 164.1 112 80.4
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 5.2e-38 161.0 103 83.5
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 8.9e-38 160.2 111 79.3
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.5e-37 159.5 110 78.2
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.5e-37 159.5 110 78.2
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 1.5e-37 159.5 110 80.0
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.5e-37 159.5 111 80.2
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 79.1
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 1.3e-36 156.4 111 78.4
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 2.9e-36 155.2 111 78.4
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 4.9e-36 154.5 111 79.3
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 4.9e-36 154.5 111 77.5
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 4.9e-36 154.5 111 77.5
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 8.3e-36 153.7 111 77.5
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 8.3e-36 153.7 111 77.5
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 76.6
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 75.7
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 77.5
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 76.6
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 76.6
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.9e-35 152.5 108 78.7
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 2.4e-35 152.1 111 77.5
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.4e-35 152.1 111 76.6
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 2.4e-35 152.1 109 77.1
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 3.2e-35 151.8 111 76.6
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 5.4e-35 151.0 107 77.6
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 1.2e-34 149.8 112 75.0
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 1.2e-34 149.8 112 75.0
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.2e-34 149.8 111 75.7
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 1.2e-34 149.8 111 75.7
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 2.1e-34 149.1 111 74.8
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.1e-34 149.1 111 74.8
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 2.7e-34 148.7 111 73.9
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 2.7e-34 148.7 111 73.9
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 2.7e-34 148.7 109 76.1
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.7e-34 148.7 112 75.0
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 3.5e-34 148.3 109 75.2
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 3.5e-34 148.3 110 76.4
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.6e-34 147.9 99 82.8
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 4.6e-34 147.9 111 73.9
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 74.8
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 73.9
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 6.0e-34 147.5 112 76.8
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 1.0e-33 146.7 111 74.8
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.0e-33 146.7 108 75.0
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.7e-33 146.0 99 79.8
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 1.7e-33 146.0 111 73.0
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 2.3e-33 145.6 111 73.0
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 3.0e-33 145.2 111 73.0
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 3.0e-33 145.2 107 78.5
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 3.0e-33 145.2 108 75.0
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 5.0e-33 144.4 111 71.2
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 6.6e-33 144.1 111 72.1
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 6.6e-33 144.1 109 72.5
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 8.6e-33 143.7 111 72.1
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 8.6e-33 143.7 111 72.1
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 8.6e-33 143.7 111 72.1
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 8.6e-33 143.7 133 66.2
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.6e-33 143.7 110 74.5
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 8.6e-33 143.7 111 73.0
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.1e-32 143.3 110 75.5
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 1.9e-32 142.5 107 73.8
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.9e-32 142.5 109 71.6
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 3.3e-32 141.7 112 73.2
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.3e-32 141.7 111 72.1
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 3.3e-32 141.7 111 72.1
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 3.3e-32 141.7 110 70.9
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 4.3e-32 141.4 109 72.5
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 4.3e-32 141.4 108 73.1
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 4.3e-32 141.4 108 73.1
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 4.3e-32 141.4 108 73.1
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 4.3e-32 141.4 100 74.0
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 5.6e-32 141.0 108 72.2
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 1.2e-31 139.8 100 73.0
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 1.2e-31 139.8 112 71.4
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.2e-31 139.8 111 73.0
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 1.6e-31 139.4 111 71.2
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 6.2e-31 137.5 107 73.8
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 6.2e-31 137.5 105 67.6
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 8.1e-31 137.1 111 69.4
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 8.1e-31 137.1 110 69.1
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.1e-30 136.7 109 71.6
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 1.1e-30 136.7 127 63.8
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.1e-30 136.7 108 71.3
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.4e-30 136.3 110 71.8
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 6.8e-30 134.0 111 69.4
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 6.8e-30 134.0 111 69.4
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 8.9e-30 133.7 111 69.4
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 8.9e-30 133.7 111 69.4
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 8.9e-30 133.7 100 71.0
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 8.9e-30 133.7 111 69.4
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 8.9e-30 133.7 111 69.4
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 8.9e-30 133.7 112 71.4
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 8.9e-30 133.7 99 71.7
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.2e-29 133.3 99 71.7
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.5e-29 132.9 108 67.6
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.5e-29 132.9 112 67.0
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 2.0e-29 132.5 112 68.8
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 2.6e-29 132.1 111 66.7
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 2.6e-29 132.1 99 70.7
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.4e-29 131.7 112 70.5
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 4.4e-29 131.3 112 68.8
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 5.8e-29 131.0 99 70.7
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.3e-28 129.8 111 68.5
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.7e-28 129.4 99 70.7
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 2.9e-28 128.6 111 68.5
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.7e-28 128.3 99 70.7
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 3.7e-28 128.3 116 63.8
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 4.9e-28 127.9 111 66.7
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 4.9e-28 127.9 109 67.0
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.9e-27 125.9 106 63.2
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 9.2e-27 123.6 111 64.0
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.1e-26 122.5 176 49.4
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.7e-26 122.1 107 67.3
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 7.8e-26 120.6 91 72.5
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.7e-25 119.4 104 60.6
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 5.6e-24 114.4 92 64.1
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 7.3e-24 114.0 83 79.5
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 8.4e-20 100.5 99 61.6
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.4e-19 99.8 111 55.9
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.7e-17 92.8 68 73.5
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.8e-14 82.8 62 75.8
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.5e-13 79.7 57 70.2
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.2e-12 75.9 50 80.0
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 2.2e-12 75.9 88 52.3
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 7.1e-11 70.9 62 62.9
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.2e-10 70.1 60 66.7
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 2.7e-10 68.9 92 52.2
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.0e-09 65.5 50 70.0
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 3.9e-09 65.1 48 75.0
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 5.6e-08 61.2 66 56.1
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 3.6e-07 58.5 71 45.1


User provided reference genes

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