Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1273.31 Capsicum annuum HOM05D001606 ORTHO05D002266 3.0e-92 342.0 203 100.0
CAN.G1489.2 Capsicum annuum HOM05D001606 ORTHO05D002266 2.3e-79 299.3 203 90.6
CAN.G301.2 Capsicum annuum HOM05D001606 ORTHO05D002266 7.1e-41 171.4 203 54.2
CAN.G990.2 Capsicum annuum HOM05D000541 ORTHO05D000137 3.7e-29 132.5 84 82.1
CAN.G203.43 Capsicum annuum HOM05D001606 ORTHO05D002266 1.0e-23 114.4 110 66.4
CAN.G1178.22 Capsicum annuum HOM05D001606 ORTHO05D002266 1.3e-23 114.0 115 60.9
Peaxi162Scf00745g00320 Petunia axillaris HOM05D001606 ORTHO05D002266 1.8e-23 113.6 76 81.6
Solyc01g088470.3 Solanum lycopersicum HOM05D001606 ORTHO05D002266 1.8e-23 113.6 76 81.6
Sopen01g035330 Solanum pennellii HOM05D001606 ORTHO05D002266 1.8e-23 113.6 76 81.6
PGSC0003DMG400001680 Solanum tuberosum HOM05D001606 ORTHO05D002266 1.8e-23 113.6 76 81.6
CAN.G756.4 Capsicum annuum HOM05D001606 ORTHO05D002266 3.0e-23 112.8 76 81.6
Nitab4.5_0008210g0060 Nicotiana tabacum HOM05D001606 ORTHO05D002266 1.9e-22 110.2 76 78.9
CAN.G726.30 Capsicum annuum HOM05D001606 ORTHO05D002266 3.3e-22 109.4 108 59.3
Cc02_g25780 Coffea canephora HOM05D001606 ORTHO05D002266 3.3e-22 109.4 76 76.3
Oeu002895.2 Olea europaea HOM05D001606 ORTHO05D002266 4.3e-22 109.0 76 75.0
Nitab4.5_0001895g0060 Nicotiana tabacum HOM05D001606 ORTHO05D002266 7.4e-22 108.2 76 77.6
CAN.G812.3 Capsicum annuum HOM05D001606 ORTHO05D002266 9.7e-22 107.8 110 58.2
SalBow5G3716 Salvia bowleyana HOM05D001606 ORTHO05D002266 1.6e-21 107.1 75 73.3
CAN.G1305.13 Capsicum annuum HOM05D001606 ORTHO05D002266 2.2e-21 106.7 75 77.3
CSS0023606 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 1.1e-20 104.4 76 71.1
Lalb_Chr01g0000041 Lupinus albus HOM05D001606 ORTHO05D002266 1.1e-20 104.4 76 72.4
Manes.02G195100 Manihot esculenta HOM05D001606 ORTHO05D002266 1.4e-20 104.0 76 72.4
PGR042G3729 Punica granatum HOM05D001606 ORTHO05D002266 1.8e-20 103.6 76 72.4
Rhsim01G0144700 Rhododendron simsii HOM05D001606 ORTHO05D002266 2.4e-20 103.2 76 71.1
unitig_26.g8866 Utricularia gibba HOM05D001606 ORTHO05D002266 3.1e-20 102.8 76 71.1
Hma1.2p1_1440F.1_g283560 Hydrangea macrophylla HOM05D001606 ORTHO05D002266 4.1e-20 102.4 76 69.7
vmacro21092 Vaccinium macrocarpon HOM05D001606 ORTHO05D002266 4.1e-20 102.4 76 71.1
CSS0049918 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 5.3e-20 102.1 76 69.7
CAN.G687.15 Capsicum annuum HOM05D000004 ORTHO05D000002 5.3e-20 102.1 71 76.1
Gohir.A03G104100 Gossypium hirsutum HOM05D001606 ORTHO05D002266 5.3e-20 102.1 76 69.7
Gohir.D02G129400 Gossypium hirsutum HOM05D001606 ORTHO05D002266 5.3e-20 102.1 76 69.7
Gorai.005G145200 Gossypium raimondii HOM05D001606 ORTHO05D002266 5.3e-20 102.1 76 69.7
Lj3g0019554 Lotus japonicus HOM05D001606 ORTHO05D002266 5.3e-20 102.1 76 68.4
arahy.Tifrunner.gnm1.ann1.93XEYI Arachis hypogaea HOM05D001606 ORTHO05D002266 6.9e-20 101.7 76 67.1
arahy.Tifrunner.gnm1.ann1.TXGY4M Arachis hypogaea HOM05D001606 ORTHO05D002266 6.9e-20 101.7 76 67.1
arahy.Tifrunner.gnm1.ann1.WYVN3V Arachis hypogaea HOM05D001606 ORTHO05D002266 9.0e-20 101.3 76 67.1
MSTRG.20655 Avicennia marina HOM05D001606 ORTHO05D002266 9.0e-20 101.3 76 69.7
COL.COLO4_27895 Corchorus olitorius HOM05D001606 ORTHO05D002266 9.0e-20 101.3 76 69.7
Duzib268G0624 Durio zibethinus HOM05D001606 ORTHO05D002266 9.0e-20 101.3 76 69.7
GSVIVG01026787001 Vitis vinifera HOM05D001606 ORTHO05D002266 9.0e-20 101.3 76 69.7
HanXRQChr11g0344071 Helianthus annuus HOM05D001606 ORTHO05D002266 1.2e-19 100.9 76 69.7
Ca_19710_v3 Cicer arietinum L. HOM05D001606 ORTHO05D002266 1.5e-19 100.5 76 67.1
ClCG11G008640 Citrullus lanatus HOM05D001606 ORTHO05D002266 1.5e-19 100.5 75 68.0
Actinidia05796 Actinidia chinensis HOM05D001606 ORTHO05D002266 2.0e-19 100.1 76 67.1
SGA_v2.0_scaffold95G28729 Striga asiatica HOM05D001606 ORTHO05D002266 2.0e-19 100.1 76 67.1
AUR62013792 Chenopodium quinoa HOM05D001606 ORTHO05D002266 2.6e-19 99.8 75 68.0
AUR62023363 Chenopodium quinoa HOM05D001606 ORTHO05D002266 2.6e-19 99.8 75 68.0
Dinv44006 Davidia involucrata HOM05D001606 ORTHO05D002266 2.6e-19 99.8 76 67.1
Thecc.02G332200 Theobroma cacao HOM05D001606 ORTHO05D002266 2.6e-19 99.8 76 67.1
TPR.G34146 Trifolium pratense HOM05D001606 ORTHO05D002266 2.6e-19 99.8 76 69.7
Hund28481 Selenicereus undatus HOM05D001606 ORTHO05D002266 3.4e-19 99.4 75 66.7
Potri.013G108700 Populus trichocarpa HOM05D001606 ORTHO05D002266 4.5e-19 99.0 76 65.8
Eucgr.F02580 Eucalyptus grandis HOM05D001606 ORTHO05D002266 5.9e-19 98.6 76 68.4
Nn1g00638 Nelumbo nucifera HOM05D001606 ORTHO05D002266 5.9e-19 98.6 76 68.4
Potri.019G081000 Populus trichocarpa HOM05D001606 ORTHO05D002266 5.9e-19 98.6 76 64.5
Sabra13G0094000 Salix brachista HOM05D001606 ORTHO05D002266 5.9e-19 98.6 76 65.8
Cpa.g.sc66.18 Carica papaya HOM05D001606 ORTHO05D002266 7.7e-19 98.2 76 68.4
Ciclev10002753m.g Citrus clementina HOM05D001606 ORTHO05D002266 7.7e-19 98.2 76 67.1
FAN08G1364 Fragaria x ananassa HOM05D001606 ORTHO05D002266 7.7e-19 98.2 76 67.1
Prupe.1G551700 Prunus persica HOM05D001606 ORTHO05D002266 7.7e-19 98.2 76 67.1
RcHm_v2.0_Chr7g0228601 Rosa chinensis HOM05D001606 ORTHO05D002266 7.7e-19 98.2 76 67.1
Sed0025058 Sechium edule HOM05D001606 ORTHO05D002266 7.7e-19 98.2 75 66.7
CiPaw.14G015800 Carya illinoinensis HOM05D001606 ORTHO05D002266 1.0e-18 97.8 76 67.1
DCAR_029532 Daucus carota HOM05D001606 ORTHO05D002266 1.0e-18 97.8 76 67.1
FvH4_5g32310 Fragaria vesca HOM05D001606 ORTHO05D002266 1.0e-18 97.8 76 67.1
FAN18G1582 Fragaria x ananassa HOM05D001606 ORTHO05D002266 1.0e-18 97.8 76 67.1
Lj9P548T42 Lonicera japonica HOM05D001606 ORTHO05D002266 1.0e-18 97.8 76 68.4
EL10Ac1g00711 Beta vulgaris HOM05D001606 ORTHO05D002266 1.3e-18 97.4 75 68.0
FAN04G1265 Fragaria x ananassa HOM05D001606 ORTHO05D002266 1.3e-18 97.4 75 66.7
TAR636G0807 Trochodendron aralioides HOM05D001606 ORTHO05D002266 1.3e-18 97.4 76 67.1
Glyma.08G238300 Glycine max HOM05D001606 ORTHO05D002266 1.7e-18 97.1 76 67.1
Atru.chr13.2405 Acer truncatum HOM05D001606 ORTHO05D002266 2.2e-18 96.7 76 63.2
Sabra19G0091900 Salix brachista HOM05D001606 ORTHO05D002266 2.2e-18 96.7 76 63.2
Migut.B01475 Erythranthe guttata HOM05D001606 ORTHO05D002266 2.9e-18 96.3 75 66.7
FAN13G1630 Fragaria x ananassa HOM05D001606 ORTHO05D002266 2.9e-18 96.3 74 66.2
Sabra19G0091800 Salix brachista HOM05D001606 ORTHO05D002266 2.9e-18 96.3 76 61.8
VMungo1127G1943 Vigna mungo HOM05D001606 ORTHO05D002266 3.8e-18 95.9 76 64.5
Carub.0003s2016 Capsella rubella HOM05D001606 ORTHO05D002266 5.0e-18 95.5 75 64.0
CDE02G2147 Ceratophyllum demersum HOM05D001606 ORTHO05D002266 5.0e-18 95.5 75 64.0
CDE11G1208 Ceratophyllum demersum HOM05D001606 ORTHO05D002266 5.0e-18 95.5 75 64.0
Gorai.003G147600 Gossypium raimondii HOM05D001606 ORTHO05D002266 5.0e-18 95.5 76 65.8
Medtr4g032660 Medicago truncatula HOM05D001606 ORTHO05D002266 5.0e-18 95.5 76 65.8
Phvul.011G002800 Phaseolus vulgaris HOM05D001606 ORTHO05D002266 5.0e-18 95.5 76 64.5
THA.LOC104799802 Tarenaya hassleriana HOM05D001606 ORTHO05D002266 5.0e-18 95.5 75 64.0
AL3G33930 Arabidopsis lyrata HOM05D001606 ORTHO05D002266 6.5e-18 95.1 75 64.0
AT3G20230 Arabidopsis thaliana HOM05D001606 ORTHO05D002266 6.5e-18 95.1 75 64.0
MD15G1410900 Malus domestica HOM05D001606 ORTHO05D002266 8.5e-18 94.7 76 65.8
QL04p025810 Quercus lobata HOM05D001606 ORTHO05D002266 8.5e-18 94.7 75 62.7
CANSAT25G0989 Cannabis sativa HOM05D001606 ORTHO05D002266 1.1e-17 94.4 73 68.5
Glyma.12G000800 Glycine max HOM05D001606 ORTHO05D002266 1.1e-17 94.4 76 64.5
Cfa022164 Carpinus fangiana HOM05D001606 ORTHO05D002266 1.4e-17 94.0 76 63.2
Haze_02918 Corylus avellana HOM05D001606 ORTHO05D002266 1.4e-17 94.0 76 63.2
Thhalv10021597m.g Eutrema salsugineum HOM05D001606 ORTHO05D002266 1.4e-17 94.0 75 62.7
TWI59G0728 Tripterygium wilfordii HOM05D001606 ORTHO05D002266 1.4e-17 94.0 76 65.8
PSO063G7249 Papaver somniferum HOM05D001606 ORTHO05D002266 1.9e-17 93.6 75 65.3
PSO782G2452 Papaver somniferum HOM05D001606 ORTHO05D002266 1.9e-17 93.6 75 65.3
Sp3g18250 Schrenkiella parvula HOM05D001606 ORTHO05D002266 1.9e-17 93.6 75 61.3
A05p28750 Brassica napus HOM05D001606 ORTHO05D002266 2.5e-17 93.2 75 62.7
BraA05t21752Z Brassica rapa HOM05D001606 ORTHO05D002266 2.5e-17 93.2 75 62.7
CANSAT25G0786 Cannabis sativa HOM05D001606 ORTHO05D002266 2.5e-17 93.2 73 67.1
Gohir.D03G140701 Gossypium hirsutum HOM05D001606 ORTHO05D002266 2.5e-17 93.2 73 64.4
HPP92_025676 Vanilla planifolia HOM05D001606 ORTHO05D002266 2.5e-17 93.2 75 61.3
ATR0057G074 Amborella trichopoda HOM05D001606 ORTHO05D002266 3.2e-17 92.8 76 63.2
Aqoxy3G02525 Aquilegia oxysepala HOM05D001606 ORTHO05D002266 3.2e-17 92.8 74 64.9
C05p44160 Brassica napus HOM05D001606 ORTHO05D002266 3.2e-17 92.8 75 61.3
BolC5t33138H Brassica oleracea HOM05D001606 ORTHO05D002266 3.2e-17 92.8 75 61.3
Dinv43579 Davidia involucrata HOM05D001606 ORTHO05D002266 4.2e-17 92.4 76 63.2
ECA248G0398 Erigeron canadensis HOM05D001606 ORTHO05D002266 4.2e-17 92.4 70 65.7
Prupe.2G113900 Prunus persica HOM05D001606 ORTHO05D002266 4.2e-17 92.4 76 61.8
CAN.G401.8 Capsicum annuum HOM05D000679 ORTHO05D002266 5.5e-17 92.0 86 60.5
RcHm_v2.0_Chr1g0343581 Rosa chinensis HOM05D001606 ORTHO05D002266 5.5e-17 92.0 76 61.8
MD07G1087000 Malus domestica HOM05D001606 ORTHO05D002266 9.4e-17 91.3 76 60.5
Lsat_1_v5_gn_0_4920 Lactuca sativa HOM05D001606 ORTHO05D002266 1.2e-16 90.9 70 64.3
Os02g0689700 Oryza sativa ssp. japonica HOM05D001606 ORTHO05D002266 1.6e-16 90.5 76 60.5
Thecc.10G001800 Theobroma cacao HOM05D001606 ORTHO05D002266 2.7e-16 89.7 74 63.5
Zm00001eb251090 Zea mays HOM05D001606 ORTHO05D002266 2.7e-16 89.7 76 60.5
FAN03G2882 Fragaria x ananassa HOM05D001606 ORTHO05D002266 4.6e-16 89.0 76 61.8
FAN10G0932 Fragaria x ananassa HOM05D001606 ORTHO05D002266 4.6e-16 89.0 76 61.8
FAN10G2446 Fragaria x ananassa HOM05D001606 ORTHO05D002266 4.6e-16 89.0 76 61.8
FvH4_7g08610 Fragaria vesca HOM05D001606 ORTHO05D002266 6.1e-16 88.6 76 61.8
Aa31LG8G7030 Aethionema arabicum HOM05D001606 ORTHO05D002266 1.0e-15 87.8 75 60.0
COL.COLO4_19323 Corchorus olitorius HOM05D001606 ORTHO05D002266 1.4e-15 87.4 74 59.5
FAN06G3999 Fragaria x ananassa HOM05D001606 ORTHO05D002266 1.8e-15 87.0 75 61.3
FAN01G2690 Fragaria x ananassa HOM05D001606 ORTHO05D002266 6.7e-15 85.1 76 57.9
Sed0018739 Sechium edule HOM05D001606 ORTHO05D002266 2.0e-14 83.6 75 57.3
Psat7g226560 Pisum sativum HOM05D001606 ORTHO05D002266 2.2e-13 80.1 60 66.7
SMO137G0133 Selaginella moellendorffii HOM05D001606 ORTHO05D002266 3.7e-13 79.3 72 54.2
CsaV3_3G010320 Cucumis sativus L. HOM05D001606 ORTHO05D002266 2.4e-12 76.6 76 52.6
MELO3C006255.2 Cucumis melo HOM05D001606 ORTHO05D002266 6.9e-12 75.1 76 51.3
Sc26g0001810 Simmondsia chinensis HOM05D001606 ORTHO05D002266 1.2e-11 74.3 56 64.3
CBR_g12617 Chara braunii HOM05D001606 ORTHO05D002266 7.7e-11 71.6 76 46.1
Mapoly0056s0039 Marchantia polymorpha HOM05D001606 ORTHO05D002266 7.7e-11 71.6 76 44.7
BcaB06g26095 Brassica carinata HOM05D001606 ORTHO05D002266 1.4e-09 67.4 75 52.0
CAN.G398.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.1e-08 63.5 73 45.2
Pp3c5_10680 Physcomitrium patens HOM05D001606 ORTHO05D002266 2.7e-08 63.2 72 38.9
AagrBONN_evm.TU.Sc2ySwM_228.2920 Anthoceros agrestis HOM05D001606 ORTHO05D002266 6.1e-08 62.0 63 46.0
Zm00001eb187680 Zea mays HOM05D001606 ORTHO05D002266 7.9e-08 61.6 55 58.2
Mapoly0085s0073 Marchantia polymorpha HOM05D001606 ORTHO05D002266 1.0e-07 61.2 71 39.4
CAN.G222.161 Capsicum annuum HOM05D000001 ORTHO05D115150 1.8e-07 60.5 40 75.0
CAN.G733.7 Capsicum annuum HOM05D000541 ORTHO05D000137 5.1e-07 58.9 66 48.5
CAN.G625.74 Capsicum annuum HOM05D000541 ORTHO05D000137 6.7e-07 58.5 66 47.0
Gohir.D02G102566 Gossypium hirsutum HOM05D001606 ORTHO05D002266 2.6e-06 56.6 71 35.2
AagrBONN_evm.TU.Sc2ySwM_368.1424 Anthoceros agrestis HOM05D001606 ORTHO05D002266 3.3e-06 56.2 72 33.3
CAN.G377.15 Capsicum annuum HOM05D000541 ORTHO05D000137 5.7e-06 55.5 103 36.9
Ciclev10003435m.g Citrus clementina HOM05D001606 ORTHO05D002266 5.7e-06 55.5 72 34.7
CSS0023690 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 9.7e-06 54.7 72 31.9
CAN.G1129.51 Capsicum annuum HOM05D000541 ORTHO05D000137 9.7e-06 54.7 66 43.9
Ciclev10002594m.g Citrus clementina HOM05D001606 ORTHO05D002266 9.7e-06 54.7 72 33.3
Gorai.012G097700 Gossypium raimondii HOM05D001606 ORTHO05D002266 9.7e-06 54.7 71 33.8
Nn4g26063 Nelumbo nucifera HOM05D001606 ORTHO05D002266 9.7e-06 54.7 72 31.9


User provided reference genes

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