Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G11.36 Capsicum annuum HOM05D000862 ORTHO05D012081 1.6e-205 719.2 357 100.0
CAN.G575.17 Capsicum annuum HOM05D000966 ORTHO05D002384 2.1e-32 144.1 85 80.0
CAN.G699.11 Capsicum annuum HOM05D009254 ORTHO05D012081 2.6e-30 137.1 97 69.1
CAN.G1515.1 Capsicum annuum HOM05D000047 ORTHO05D012081 1.9e-25 120.9 139 51.8
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.3e-21 108.2 105 56.2
CAN.G39.3 Capsicum annuum HOM05D022866 ORTHO05D012081 1.2e-19 101.7 81 63.0
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 1.9e-17 94.4 109 49.5
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 3.3e-17 93.6 109 48.6
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 3.7e-16 90.1 87 51.7
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 6.3e-16 89.4 106 50.0
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.9e-13 80.5 92 46.7
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.5e-12 77.4 102 42.2
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 3.2e-12 77.0 129 34.1
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 3.2e-12 77.0 129 34.1
Nitab4.5_0000014g0280 Nicotiana tabacum HOM05D023909 ORTHO05D012081 7.2e-12 75.9 78 52.6
Nitab4.5_0001568g0080 Nicotiana tabacum HOM05D000862 ORTHO05D003588 7.2e-12 75.9 93 45.2
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 1.6e-11 74.7 134 36.6
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 2.7e-11 73.9 89 42.7
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 4.6e-11 73.2 93 44.1
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 7.9e-11 72.4 86 47.7
Solyc09g083020.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 1.0e-10 72.0 131 39.7
PGSC0003DMG400008668 Solanum tuberosum HOM05D022866 ORTHO05D001422 1.0e-10 72.0 76 57.9
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 1.3e-10 71.6 104 44.2
Nitab4.5_0001124g0120 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.8e-10 71.2 93 46.2
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 2.3e-10 70.9 101 41.6
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 2.3e-10 70.9 119 36.1
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 2.3e-10 70.9 88 44.3
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 5.1e-10 69.7 85 41.2
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 6.7e-10 69.3 96 46.9
Peaxi162Scf00441g00622 Petunia axillaris HOM05D000862 ORTHO05D003588 1.5e-09 68.2 96 42.7
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 4.3e-09 66.6 91 42.9
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 4.3e-09 66.6 93 41.9
Sopen09g031890 Solanum pennellii HOM05D000862 ORTHO05D003588 7.4e-09 65.9 85 42.4
CAN.G422.1 Capsicum annuum HOM05D000862 ORTHO05D003588 9.7e-09 65.5 44 70.5
CAN.G749.21 Capsicum annuum HOM05D000862 ORTHO05D003588 9.7e-09 65.5 130 36.2
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 1.7e-08 64.7 97 39.2
Nitab4.5_0001124g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.7e-08 64.7 72 50.0
Rhsim04G0238100 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.7e-08 64.7 90 42.2
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 2.2e-08 64.3 89 39.3
CSS0022415 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.2e-08 64.3 91 42.9
PGSC0003DMG400036830 Solanum tuberosum HOM05D000862 ORTHO05D003588 2.2e-08 64.3 101 36.6
Dinv15175 Davidia involucrata HOM05D000862 ORTHO05D003588 3.7e-08 63.5 90 40.0
TAR636G0362 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.7e-08 63.5 108 38.0
Atru.chr13.391 Acer truncatum HOM05D000862 ORTHO05D000943 4.8e-08 63.2 53 56.6
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 6.3e-08 62.8 107 37.4
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 6.3e-08 62.8 107 37.4
CAN.G868.9 Capsicum annuum HOM05D000862 ORTHO05D003588 6.3e-08 62.8 93 39.8
Nitab4.5_0012347g0020 Nicotiana tabacum HOM05D000862 ORTHO05D003588 6.3e-08 62.8 90 43.3
Peaxi162Scf00788g00215 Petunia axillaris HOM05D000862 ORTHO05D003588 6.3e-08 62.8 62 50.0
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 8.2e-08 62.4 88 40.9
TAR636G1603 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.1e-07 62.0 100 38.0
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 1.4e-07 61.6 98 37.8
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.4e-07 61.6 111 37.8
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.4e-07 61.6 89 38.2
Sopen09g031910 Solanum pennellii HOM05D000862 ORTHO05D003588 1.4e-07 61.6 97 40.2
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 1.8e-07 61.2 88 40.9
THA.LOC104809315 Tarenaya hassleriana HOM05D000862 ORTHO05D000943 1.8e-07 61.2 64 48.4
AT1G05760 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 2.4e-07 60.8 89 38.2
CSS0042531 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.4e-07 60.8 106 38.7
ECA233G3755 Erigeron canadensis HOM05D000862 ORTHO05D003588 2.4e-07 60.8 104 41.3
Nitab4.5_0001124g0060 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.4e-07 60.8 39 69.2
Aqoxy2G02742 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 3.1e-07 60.5 96 38.5
FvH4_2g39220 Fragaria vesca HOM05D000862 ORTHO05D000943 3.1e-07 60.5 91 39.6
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 3.1e-07 60.5 105 36.2
Cpa.g.c31450.2 Carica papaya HOM05D000862 ORTHO05D000943 4.1e-07 60.1 64 43.8
Peaxi162Scf00200g00051 Petunia axillaris HOM05D000862 ORTHO05D003588 4.1e-07 60.1 87 44.8
Solyc09g083040.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 5.3e-07 59.7 97 38.1
TWI56G0138 Tripterygium wilfordii HOM05D000862 ORTHO05D000943 5.3e-07 59.7 64 43.8
Aqoxy2G02743 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 6.9e-07 59.3 61 50.8
CANSAT25G1772 Cannabis sativa HOM05D000862 ORTHO05D000943 6.9e-07 59.3 74 41.9
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 6.9e-07 59.3 141 36.2
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 9.1e-07 58.9 82 37.8
COL.COLO4_26231 Corchorus olitorius HOM05D000862 ORTHO05D000943 9.1e-07 58.9 64 43.8
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 9.1e-07 58.9 60 53.3
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 9.1e-07 58.9 100 36.0
Carub.0001s1926 Capsella rubella HOM05D000862 ORTHO05D000943 1.2e-06 58.5 64 43.8
CARHR005280 Cardamine hirsuta HOM05D000862 ORTHO05D003588 1.2e-06 58.5 89 41.6
Sp1g17550 Schrenkiella parvula HOM05D000862 ORTHO05D000943 1.2e-06 58.5 64 43.8
Thecc.08G034700 Theobroma cacao HOM05D000862 ORTHO05D000943 1.2e-06 58.5 74 40.5
AL1G32440 Arabidopsis lyrata HOM05D000862 ORTHO05D000943 1.5e-06 58.2 64 43.8
AT1G19715 Arabidopsis thaliana HOM05D000862 ORTHO05D000943 1.5e-06 58.2 64 43.8
Dinv15178 Davidia involucrata HOM05D000862 ORTHO05D003588 1.5e-06 58.2 96 36.5
Gohir.A05G189750 Gossypium hirsutum HOM05D000862 ORTHO05D000943 1.5e-06 58.2 63 46.0
Gohir.D05G193050 Gossypium hirsutum HOM05D000862 ORTHO05D000943 1.5e-06 58.2 63 46.0
Gorai.009G198200 Gossypium raimondii HOM05D000862 ORTHO05D000003 1.5e-06 58.2 63 46.0
Nitab4.5_0000941g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.5e-06 58.2 84 45.2
AL1G15670 Arabidopsis lyrata HOM05D000862 ORTHO05D003588 2.0e-06 57.8 89 38.2
BcaB03g12902 Brassica carinata HOM05D000862 ORTHO05D000943 2.0e-06 57.8 64 43.8
Carub.0001s0511 Capsella rubella HOM05D000862 ORTHO05D003588 2.0e-06 57.8 89 38.2
CARHR005260 Cardamine hirsuta HOM05D000862 ORTHO05D003588 2.6e-06 57.4 89 39.3
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 2.6e-06 57.4 80 40.0
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 2.6e-06 57.4 86 38.4
Manes.05G154000 Manihot esculenta HOM05D000862 ORTHO05D000943 2.6e-06 57.4 89 37.1
Rhsim04G0235700 Rhododendron simsii HOM05D000862 ORTHO05D003588 2.6e-06 57.4 97 36.1
Aa31LG4G5670 Aethionema arabicum HOM05D000862 ORTHO05D000943 3.4e-06 57.0 64 43.8
A06p15840 Brassica napus HOM05D000862 ORTHO05D000943 3.4e-06 57.0 66 42.4
C05p18160 Brassica napus HOM05D000862 ORTHO05D000003 3.4e-06 57.0 66 42.4
BolC5t30523H Brassica oleracea HOM05D000862 ORTHO05D000003 3.4e-06 57.0 66 42.4
BraA06t24694Z Brassica rapa HOM05D000862 ORTHO05D000943 3.4e-06 57.0 66 42.4
FAN15G3373 Fragaria x ananassa HOM05D000862 ORTHO05D000943 3.4e-06 57.0 84 39.3
Peaxi162Scf00441g00620 Petunia axillaris HOM05D000862 ORTHO05D003588 3.4e-06 57.0 119 35.3
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.4e-06 57.0 70 44.3
Duzib093G0362 Durio zibethinus HOM05D000862 ORTHO05D000943 4.5e-06 56.6 63 44.4
RcHm_v2.0_Chr6g0301821 Rosa chinensis HOM05D000862 ORTHO05D000943 4.5e-06 56.6 84 38.1
TAR636G0883 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.5e-06 56.6 116 32.8
Aa31LG7G4300 Aethionema arabicum HOM05D000862 ORTHO05D000943 5.9e-06 56.2 64 39.1
Nitab4.5_0009013g0020 Nicotiana tabacum HOM05D009254 ORTHO05D012081 5.9e-06 56.2 34 70.6
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 5.9e-06 56.2 97 36.1
Thhalv10007145m.g Eutrema salsugineum HOM05D000862 ORTHO05D000943 7.7e-06 55.8 64 42.2
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 7.7e-06 55.8 89 37.1
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 7.7e-06 55.8 107 34.6


User provided reference genes

Program Settings