Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 0.0e+00 1329.3 662 100.0
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 3.2e-308 1061.2 674 81.2
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 7.1e-308 1060.1 673 81.0
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.6e-302 1041.6 674 79.8
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.5e-260 901.0 684 70.0
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-257 893.3 759 64.2
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 9.8e-249 863.6 695 66.8
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 6.4e-248 860.9 672 68.5
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 6.6e-245 850.9 672 67.6
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 3.6e-243 845.1 674 65.6
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.3e-199 697.6 467 75.2
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.1e-162 577.8 694 48.6
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 4.0e-157 559.3 698 47.9
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 5.7e-156 555.4 688 48.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 9.7e-156 554.7 705 47.7
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.2e-155 553.5 705 47.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.1e-154 551.2 699 47.6
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.2e-150 537.7 709 46.4
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.3e-149 533.5 693 47.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 2.3e-149 533.5 735 44.1
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 3.4e-148 529.6 699 46.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 3.1e-146 523.1 707 45.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.7e-144 517.3 709 43.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 3.3e-143 513.1 688 43.3
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.0e-141 506.1 345 72.8
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 6.8e-141 505.4 699 44.2
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.2e-140 504.6 707 44.3
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.4e-140 503.1 704 44.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.4e-138 497.7 705 44.8
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.9e-136 490.0 706 43.5
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.9e-135 487.3 726 42.1
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.4e-132 476.5 700 41.6
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.2e-131 473.8 665 44.4
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.1e-130 471.5 710 41.4
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.2e-130 469.9 713 41.8
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 7.0e-130 468.8 651 42.9
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 2.7e-129 466.8 690 42.6
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.7e-128 464.2 710 41.8
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 8.6e-128 461.8 716 41.3
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.1e-127 461.5 704 41.6
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.5e-127 460.3 555 48.8
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.3e-127 459.5 720 40.7
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.6e-126 456.4 718 40.3
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 8.0e-126 455.3 687 40.5
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 3.1e-125 453.4 718 40.1
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 2.2e-123 447.2 714 42.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.9e-123 446.0 717 39.9
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 4.9e-123 446.0 706 39.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.9e-122 444.1 720 40.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.1e-122 443.0 678 40.9
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 5.4e-122 442.6 696 41.7
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 7.1e-122 442.2 713 41.9
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 9.2e-122 441.8 712 40.3
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 2.1e-121 440.7 683 40.3
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.6e-121 439.5 711 41.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.7e-120 437.6 700 41.0
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 5.1e-120 436.0 687 41.8
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 5.1e-120 436.0 701 40.2
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 6.6e-120 435.6 585 43.1
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.6e-120 435.3 710 41.5
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.5e-119 433.7 712 41.3
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.2e-118 431.4 708 41.4
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.1e-118 430.6 677 39.3
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.3e-117 427.2 681 39.6
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 9.9e-116 421.8 715 38.9
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 9.9e-116 421.8 702 39.6
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.3e-115 421.4 731 40.4
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-115 421.4 655 40.6
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.7e-115 421.0 713 39.0
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.2e-114 416.8 604 42.1
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 9.2e-114 415.2 716 39.8
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 8.6e-112 408.7 688 38.4
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 3.3e-111 406.8 554 45.8
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 6.2e-110 402.5 593 42.7
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.4e-109 400.6 591 41.3
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-108 398.3 594 40.7
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.0e-108 397.5 663 40.7
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 3.4e-108 396.7 637 40.7
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.2e-107 394.0 654 39.3
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.8e-107 393.3 654 39.3
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.2e-105 388.3 593 40.3
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.3e-104 384.8 584 39.7
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.9e-104 383.3 645 39.2
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 5.1e-104 382.9 605 40.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 5.1e-104 382.9 698 39.3
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.1e-103 381.7 607 39.4
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.5e-103 381.3 715 36.9
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 9.6e-103 378.6 697 38.5
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.8e-102 377.1 715 37.3
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.5e-100 371.3 715 37.1
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.2e-99 367.5 623 37.7
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 3.8e-99 366.7 703 36.8
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.6e-97 361.3 590 39.7
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 6.0e-97 359.4 597 38.5
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 8.7e-96 355.5 662 37.3
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 6.0e-89 332.8 202 79.2
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 5.6e-87 326.2 568 38.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.5e-84 318.2 463 41.7
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 3.4e-84 317.0 613 38.0
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 8.7e-80 302.4 457 41.4
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 9.0e-77 292.4 679 33.7
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 5.8e-76 289.7 507 38.1
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.7e-75 288.1 575 34.6
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.9e-75 287.3 730 32.1
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.8e-75 287.0 414 41.5
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.2e-74 283.5 676 33.3
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-73 282.0 655 34.8
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 2.1e-73 281.2 666 32.4
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.9e-71 274.6 506 36.8
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 3.3e-71 273.9 494 40.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.4e-69 267.7 502 35.3
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 4.5e-68 263.5 543 35.0
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.9e-68 263.1 638 31.5
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.5e-66 257.7 679 32.7
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.1e-65 254.6 673 31.6
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.9e-65 252.7 411 39.7
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.3e-63 246.9 356 41.3
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.2e-62 244.6 676 30.8
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.2e-62 244.6 676 30.8
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.4e-61 241.9 470 36.0
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 4.5e-60 236.9 462 36.6
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.7e-54 217.2 467 35.3
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.4e-48 198.7 435 33.1
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.1e-37 162.5 368 30.4
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 3.1e-37 161.0 305 37.0
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 4.1e-37 160.6 373 34.0
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.5e-34 152.1 309 35.0
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.9e-34 151.8 156 54.5
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.2e-34 151.0 211 39.3
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 4.2e-34 150.6 227 42.7
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.2e-33 149.1 442 31.0
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.6e-33 148.7 246 41.5
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.8e-32 142.9 229 40.6
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.7e-31 140.2 229 38.4
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.3e-30 136.7 145 47.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.5e-28 130.6 189 40.7
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 5.9e-28 130.2 338 34.0
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 5.0e-27 127.1 230 37.0
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 8.6e-27 126.3 305 32.5
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.9e-26 125.2 440 27.3
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 5.6e-26 123.6 233 37.3
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.4e-24 119.0 349 30.1
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 9.8e-23 112.8 320 29.4
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 8.3e-22 109.8 134 47.0
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.3e-18 97.8 107 49.5
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 7.3e-18 96.7 233 33.9
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.6e-17 95.5 637 25.3
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.8e-16 90.1 83 48.2
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 8.9e-16 89.7 148 38.5
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 3.4e-15 87.8 88 48.9
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 7.5e-15 86.7 137 41.6
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.4e-13 81.6 81 46.9
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.7e-12 78.2 80 46.2
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.0e-11 73.9 101 42.6
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 8.6e-11 73.2 124 39.5
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.5e-10 71.6 64 50.0
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.3e-10 70.9 89 40.4
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.8e-09 68.2 45 62.2
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.4e-08 65.9 75 42.7
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 2.3e-08 65.1 121 33.9
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 4.0e-08 64.3 135 34.8
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 1.2e-07 62.8 120 32.5
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.5e-07 62.4 81 50.6
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.2e-06 58.5 138 31.2


User provided reference genes

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