Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G100.36 Capsicum annuum HOM05D008299 ORTHO05D010400 1.3e-44 182.6 85 100.0
CAN.G343.2 Capsicum annuum HOM05D000445 ORTHO05D010400 7.8e-42 173.3 83 96.4
CAN.G1298.15 Capsicum annuum HOM05D008299 ORTHO05D010400 1.0e-41 172.9 84 95.2
CAN.G1648.16 Capsicum annuum HOM05D008299 ORTHO05D010400 2.5e-40 168.3 84 92.9
CAN.G219.11 Capsicum annuum HOM05D000445 ORTHO05D010400 7.3e-40 166.8 83 92.8
CAN.G129.17 Capsicum annuum HOM05D008299 ORTHO05D010400 2.0e-37 158.7 83 89.2
CAN.G719.1 Capsicum annuum HOM05D008299 ORTHO05D010400 2.0e-37 158.7 84 86.9
CSS0008439 Camellia sinensis var. sinensis HOM05D008299 ORTHO05D010400 4.5e-37 157.5 79 91.1
CSS0021182 Camellia sinensis var. sinensis HOM05D008299 ORTHO05D010400 4.5e-37 157.5 79 91.1
Solyc11g021080.3 Solanum lycopersicum HOM05D008299 ORTHO05D010400 4.9e-36 154.1 83 86.7
Solyc01g017080.2 Solanum lycopersicum HOM05D008299 ORTHO05D010400 1.4e-35 152.5 83 85.5
Solyc02g011920.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 9.9e-29 129.8 70 85.7
SGA_v2.0_scaffold379G50347 Striga asiatica HOM05D008299 ORTHO05D010400 7.4e-24 113.6 65 78.5
Solyc11g018700.3 Solanum lycopersicum HOM05D008299 ORTHO05D010400 3.7e-23 111.3 53 94.3
CAN.G1178.2 Capsicum annuum HOM05D008299 ORTHO05D010400 2.2e-20 102.1 50 92.0
Solyc01g017150.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 2.5e-19 98.6 53 81.1
Solyc00g500038.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.5e-19 97.4 47 91.5
Solyc00g500045.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.5e-19 97.4 47 91.5
Solyc00g500082.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.5e-19 97.4 47 91.5
Solyc00g500127.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.5e-19 97.4 47 91.5
Solyc00g500197.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.5e-19 97.4 47 91.5
Solyc00g500300.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.5e-19 97.4 47 91.5
Solyc00g500326.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 5.5e-19 97.4 47 91.5
Migut.L00537 Erythranthe guttata HOM05D008299 ORTHO05D010400 2.1e-18 95.5 49 85.7
Potri.019G028450 Populus trichocarpa HOM05D008299 ORTHO05D010400 1.1e-16 89.7 67 68.7
Thhalv10003089m.g Eutrema salsugineum HOM05D008299 ORTHO05D010400 7.4e-16 87.0 54 74.1
Solyc03g058240.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 4.1e-14 81.3 53 69.8
ATCG00870 Arabidopsis thaliana HOM05D008299 ORTHO05D010400 4.5e-13 77.8 50 74.0
ATCG01270 Arabidopsis thaliana HOM05D008299 ORTHO05D010400 4.5e-13 77.8 50 74.0
BraSC48t46294Z Brassica rapa HOM05D008299 ORTHO05D010400 4.5e-13 77.8 50 74.0
BraSC48t46311Z Brassica rapa HOM05D008299 ORTHO05D010400 4.5e-13 77.8 50 74.0
BraSC48t46344Z Brassica rapa HOM05D008299 ORTHO05D010400 4.5e-13 77.8 50 74.0
CARHR282310 Cardamine hirsuta HOM05D008299 ORTHO05D010400 4.5e-13 77.8 50 74.0
CARHR282550 Cardamine hirsuta HOM05D008299 ORTHO05D010400 4.5e-13 77.8 50 74.0
Thhalv10012154m.g Eutrema salsugineum HOM05D008299 ORTHO05D010400 1.3e-12 76.3 50 72.0
BraSC54t46357Z Brassica rapa HOM05D008299 ORTHO05D010400 1.7e-12 75.9 42 83.3
Gohir.1Z050502 Gossypium hirsutum HOM05D008299 ORTHO05D010400 1.7e-12 75.9 42 83.3
Gohir.D02G117444 Gossypium hirsutum HOM05D008299 ORTHO05D010400 1.7e-12 75.9 42 83.3
C06p23160 Brassica napus HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
C09p24750 Brassica napus HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BolSC29t60493H Brassica oleracea HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BolSC37t60783H Brassica oleracea HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BolSC44t60837H Brassica oleracea HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BolSC45t60893H Brassica oleracea HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BolSC49t61213H Brassica oleracea HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BraSC103t45416Z Brassica rapa HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BraSC103t45438Z Brassica rapa HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BraSC143t45671Z Brassica rapa HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BraSC25t45895Z Brassica rapa HOM05D008299 ORTHO05D010400 1.1e-11 73.2 50 70.0
BraSC138t45545Z Brassica rapa HOM05D008299 ORTHO05D010400 1.4e-11 72.8 59 62.7
BraSC58t46447Z Brassica rapa HOM05D008299 ORTHO05D010400 4.2e-11 71.2 42 78.6
BraSC59t46562Z Brassica rapa HOM05D008299 ORTHO05D010400 4.2e-11 71.2 42 78.6
RcHm_v2.0_Chr5g0051131 Rosa chinensis HOM05D008299 ORTHO05D010400 5.5e-11 70.9 33 87.9
RcHm_v2.0_CPg0501791 Rosa chinensis HOM05D008299 ORTHO05D010400 5.5e-11 70.9 33 87.9
RcHm_v2.0_CPg0502621 Rosa chinensis HOM05D008299 ORTHO05D010400 5.5e-11 70.9 33 87.9
BolC2t08923H Brassica oleracea HOM05D008299 ORTHO05D010400 7.2e-11 70.5 48 68.8
BolSC29t60562H Brassica oleracea HOM05D008299 ORTHO05D010400 7.2e-11 70.5 43 74.4
AL9U12040 Arabidopsis lyrata HOM05D008299 ORTHO05D010400 1.4e-09 66.2 45 68.9
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.1e-08 63.2 37 75.7
ClCG00G002340 Citrullus lanatus HOM05D008299 ORTHO05D010400 3.3e-08 61.6 29 86.2
Hma1.2p1_0005F.1_g004230 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 5.3e-06 54.3 35 71.4


User provided reference genes

Program Settings