Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 1.9e-19 98.2 50 100.0
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 1.9e-19 98.2 50 100.0
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 1.9e-19 98.2 50 100.0
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 1.9e-19 98.2 50 100.0
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 2.7e-18 94.4 48 97.9
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 2.7e-18 94.4 48 97.9
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 4.6e-18 93.6 48 97.9
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 1.4e-14 82.0 48 91.7
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 1.4e-14 82.0 48 91.7
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 2.4e-14 81.3 48 89.6
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 2.4e-14 81.3 48 89.6
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 2.4e-14 81.3 47 87.2
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 3.2e-11 70.9 50 82.0
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 7.2e-11 69.7 50 80.0
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 1.6e-10 68.6 49 77.6
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 1.6e-10 68.6 49 77.6
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 4.7e-10 67.0 39 87.2
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 4.7e-10 67.0 54 72.2
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 7.9e-10 66.2 47 72.3
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 7.9e-10 66.2 54 70.4
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 7.9e-10 66.2 54 70.4
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 7.9e-10 66.2 54 70.4
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 1.4e-09 65.5 47 68.1
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 1.4e-09 65.5 47 68.1
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 1.4e-09 65.5 47 68.1
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 1.4e-09 65.5 47 68.1
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 1.4e-09 65.5 47 68.1
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 3.0e-09 64.3 50 68.0
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 3.9e-09 63.9 47 66.0
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 3.9e-09 63.9 54 68.5
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 5.1e-09 63.5 47 66.0
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 5.1e-09 63.5 47 66.0
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 5.1e-09 63.5 39 84.6
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 6.7e-09 63.2 47 66.0
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 6.7e-09 63.2 54 66.7
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 6.7e-09 63.2 44 68.2
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 6.7e-09 63.2 48 66.7
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 8.8e-09 62.8 47 70.2
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 8.8e-09 62.8 54 64.8
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 1.1e-08 62.4 50 68.0
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 1.1e-08 62.4 39 79.5
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 1.5e-08 62.0 47 63.8
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 81.6
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 81.6
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 1.5e-08 62.0 39 76.9
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.5e-08 62.0 47 63.8
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.0e-08 61.6 39 82.1
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 2.0e-08 61.6 39 76.9
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 2.6e-08 61.2 48 70.8
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 2.6e-08 61.2 36 86.1
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 3.3e-08 60.8 39 76.9
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 81.6
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 3.3e-08 60.8 54 66.7
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 3.3e-08 60.8 35 88.6
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 81.6
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 3.3e-08 60.8 54 64.8
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 3.3e-08 60.8 39 82.1
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.3e-08 60.8 39 82.1
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 4.4e-08 60.5 47 61.7
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 4.4e-08 60.5 38 78.9
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 4.4e-08 60.5 54 63.0
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.4e-08 60.5 39 79.5
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.4e-08 60.5 38 78.9
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.4e-08 60.5 38 81.6
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 4.4e-08 60.5 38 81.6
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 4.4e-08 60.5 38 78.9
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 4.4e-08 60.5 47 66.0
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 4.4e-08 60.5 54 63.0
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 4.4e-08 60.5 45 73.3
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 5.7e-08 60.1 38 81.6
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 5.7e-08 60.1 54 64.8
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 5.7e-08 60.1 38 81.6
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 5.7e-08 60.1 38 81.6
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.7e-08 60.1 38 81.6
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 5.7e-08 60.1 39 79.5
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 7.4e-08 59.7 38 78.9
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 7.4e-08 59.7 54 64.8
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 9.7e-08 59.3 41 70.7
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 9.7e-08 59.3 39 74.4
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 9.7e-08 59.3 38 81.6
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 9.7e-08 59.3 38 81.6
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 9.7e-08 59.3 38 78.9
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 9.7e-08 59.3 38 78.9
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 1.3e-07 58.9 38 78.9
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 1.3e-07 58.9 35 82.9
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 1.3e-07 58.9 39 79.5
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 1.3e-07 58.9 39 76.9
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 1.3e-07 58.9 38 78.9
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.3e-07 58.9 49 67.3
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 1.3e-07 58.9 38 78.9
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.3e-07 58.9 54 61.1
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.3e-07 58.9 38 78.9
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.3e-07 58.9 38 78.9
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 1.3e-07 58.9 48 62.5
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 1.7e-07 58.5 38 78.9
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.7e-07 58.5 38 78.9
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 1.7e-07 58.5 38 78.9
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 1.7e-07 58.5 38 78.9
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 1.7e-07 58.5 38 76.3
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.7e-07 58.5 41 70.7
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 2.2e-07 58.2 47 61.7
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.2e-07 58.2 38 76.3
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 2.2e-07 58.2 39 76.9
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 2.2e-07 58.2 38 78.9
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 2.8e-07 57.8 39 76.9
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 2.8e-07 57.8 38 76.3
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 2.8e-07 57.8 49 67.3
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.8e-07 57.8 38 78.9
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 2.8e-07 57.8 44 65.9
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 3.7e-07 57.4 38 76.3
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 3.7e-07 57.4 38 78.9
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 3.7e-07 57.4 45 68.9
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 4.8e-07 57.0 38 76.3
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 4.8e-07 57.0 38 73.7
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 4.8e-07 57.0 38 76.3
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 4.8e-07 57.0 39 74.4
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 4.8e-07 57.0 38 76.3
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 6.3e-07 56.6 53 62.3
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 6.3e-07 56.6 54 63.0
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 6.3e-07 56.6 50 64.0
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 8.2e-07 56.2 38 76.3
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 8.2e-07 56.2 38 78.9
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 8.2e-07 56.2 38 76.3
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 8.2e-07 56.2 38 73.7
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 1.1e-06 55.8 50 60.0
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 1.1e-06 55.8 34 82.4
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.1e-06 55.8 34 82.4
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 1.4e-06 55.5 37 78.4
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 1.4e-06 55.5 34 85.3
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.8e-06 55.1 38 71.1
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 1.8e-06 55.1 38 76.3
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 2.4e-06 54.7 35 80.0
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 2.4e-06 54.7 38 78.9
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 3.1e-06 54.3 38 73.7
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 4.1e-06 53.9 44 59.1
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 5.3e-06 53.5 38 71.1
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 5.3e-06 53.5 39 69.2
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 5.3e-06 53.5 34 76.5
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 5.3e-06 53.5 35 77.1
AUR62010366 Chenopodium quinoa HOM05D004818 ORTHO05D005444 7.0e-06 53.1 34 79.4
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 7.0e-06 53.1 50 60.0
CDE05G2892 Ceratophyllum demersum HOM05D000830 ORTHO05D002187 9.1e-06 52.8 34 76.5
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 9.1e-06 52.8 34 76.5


User provided reference genes

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