Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 4.2e-297 1023.8 492 100.0
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.1e-296 1021.5 492 99.6
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 3.3e-294 1014.2 500 98.0
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 1.4e-284 982.2 478 98.1
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.8e-284 981.9 478 98.1
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 8.0e-280 966.5 478 96.7
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 5.9e-275 950.3 481 94.6
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 7.2e-273 943.3 478 94.1
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 8.9e-271 936.4 478 93.9
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.2e-270 936.0 478 93.5
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 4.9e-269 930.6 471 94.3
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 5.4e-268 927.2 479 92.7
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 6.0e-259 897.1 486 87.9
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 2.3e-258 895.2 478 88.3
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 4.3e-249 864.4 471 86.0
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.1e-247 859.8 471 85.8
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 5.8e-246 854.0 471 85.1
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 7.5e-246 853.6 471 85.1
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 9.9e-246 853.2 479 84.8
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.4e-244 849.4 478 83.1
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.2e-244 848.2 471 84.3
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 7.1e-244 847.0 479 84.1
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 9.2e-244 846.7 480 82.7
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 4.6e-243 844.3 483 83.4
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 4.6e-243 844.3 483 83.4
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 7.8e-243 843.6 478 83.7
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 7.8e-243 843.6 477 83.9
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.0e-242 843.2 474 84.4
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.7e-242 842.4 472 84.1
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 2.3e-242 842.0 478 82.6
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.0e-242 841.6 471 83.9
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 5.1e-242 840.9 479 84.1
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.1e-242 840.9 471 83.7
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 5.1e-242 840.9 475 84.8
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 3.3e-241 838.2 471 83.9
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 4.3e-241 837.8 474 84.2
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.3e-241 837.0 481 83.2
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 9.5e-241 836.6 479 82.7
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.2e-240 836.3 478 82.8
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 1.2e-240 836.3 478 82.8
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.6e-240 835.9 478 83.1
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 6.2e-240 833.9 471 84.1
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 6.2e-240 833.9 480 82.9
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.8e-239 832.4 472 83.3
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 3.1e-239 831.6 478 82.4
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 8.9e-239 830.1 480 83.5
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 1.2e-238 829.7 478 81.8
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.0e-238 828.9 478 81.2
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 5.8e-238 827.4 480 82.7
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 5.8e-238 827.4 478 81.2
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 9.9e-238 826.6 473 82.0
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 1.7e-237 825.9 480 81.5
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.9e-237 825.1 486 80.9
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 2.9e-237 825.1 480 81.5
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.9e-237 825.1 481 81.5
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 3.8e-237 824.7 471 81.3
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 4.9e-237 824.3 478 81.8
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.4e-237 823.9 482 80.9
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.4e-236 822.8 484 81.4
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.4e-236 822.8 471 82.0
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.9e-236 822.4 471 81.1
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 2.4e-236 822.0 472 82.6
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 3.2e-236 821.6 479 81.2
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 5.4e-236 820.8 478 81.0
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 7.1e-236 820.5 480 82.1
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 7.1e-236 820.5 479 81.6
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.2e-235 819.7 480 81.2
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 2.1e-235 818.9 479 81.2
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 6.0e-235 817.4 480 81.0
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.3e-234 816.2 471 82.0
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 3.9e-234 814.7 478 80.5
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 5.1e-234 814.3 479 80.2
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 5.1e-234 814.3 471 82.6
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 5.1e-234 814.3 470 81.7
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 8.7e-234 813.5 496 78.8
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 8.7e-234 813.5 457 83.8
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.5e-233 812.8 473 81.6
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.9e-233 812.4 473 81.8
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 5.6e-233 810.8 479 80.6
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 6.2e-232 807.4 479 80.8
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 8.1e-232 807.0 473 81.6
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 1.1e-231 806.6 470 82.6
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.1e-231 806.6 486 79.4
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.0e-231 804.7 472 81.1
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 4.0e-231 804.7 460 82.4
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.0e-230 802.4 480 78.8
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.4e-230 801.2 472 80.7
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.3e-229 799.7 442 85.5
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.3e-229 799.7 443 85.3
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 4.9e-229 797.7 503 76.9
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 8.4e-229 797.0 483 79.3
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 3.2e-228 795.0 470 79.1
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 7.8e-227 790.4 474 80.6
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.0e-226 790.0 473 80.8
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 6.6e-226 787.3 473 79.7
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.3e-224 783.1 456 79.2
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 6.2e-224 780.8 460 78.3
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.3e-223 777.7 491 76.6
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.2e-220 768.1 468 78.0
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.2e-214 750.0 478 75.9
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 1.3e-213 746.5 478 75.5
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 6.4e-213 744.2 506 73.3
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.9e-212 742.7 460 78.9
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.2e-211 740.0 480 74.6
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 8.7e-210 733.8 500 72.0
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 3.7e-208 728.4 475 73.1
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 8.4e-205 717.2 472 72.2
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.5e-201 706.4 471 71.5
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.5e-201 706.4 514 70.0
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 2.4e-199 699.1 483 71.0
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 9.0e-199 697.2 477 69.2
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 2.6e-198 695.7 386 83.4
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 2.4e-183 646.0 483 67.9
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 4.1e-183 645.2 464 68.8
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.0e-181 638.3 360 80.8
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 5.2e-178 628.2 360 80.0
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.2e-173 612.8 472 66.5
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 4.4e-161 572.0 473 62.2
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.5e-148 530.4 420 66.0
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 5.4e-143 511.9 304 76.6
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 8.0e-139 498.0 281 84.0
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 2.3e-138 496.5 410 60.0
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 2.6e-137 493.0 275 84.4
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 4.4e-137 492.3 304 75.0
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 3.0e-133 479.6 439 53.5
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 8.9e-130 468.0 306 73.9
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 4.4e-121 439.1 304 68.4
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.1e-115 420.2 416 55.3
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.9e-111 407.1 470 51.5
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.3e-108 395.2 255 74.5
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 9.3e-103 378.3 211 85.3
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 4.3e-100 369.4 228 77.6
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 4.3e-100 369.4 228 77.6
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 1.8e-93 347.4 427 49.2
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 6.1e-86 322.4 180 83.9
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 6.1e-86 322.4 200 78.5
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 3.9e-85 319.7 180 83.3
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 3.0e-69 266.9 147 80.3
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 5.3e-66 256.1 171 69.6
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 2.6e-65 253.8 171 69.0
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 4.5e-49 199.9 111 84.7
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.1e-47 195.3 99 84.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.1e-47 195.3 99 84.8
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 6.8e-37 159.5 105 70.5
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.8e-34 151.4 97 72.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.3e-32 145.2 95 77.9
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 6.2e-30 136.3 77 79.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.4e-29 135.2 85 74.1
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 2.4e-26 124.4 77 75.3
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 4.3e-23 113.6 82 64.6
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 5.6e-23 113.2 135 43.7
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 8.9e-21 105.9 65 72.3
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.7e-19 101.7 56 80.4
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 6.6e-16 89.7 62 67.7
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 4.3e-15 87.0 92 48.9
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 4.7e-14 83.6 105 49.5
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.8e-13 81.6 72 58.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.8e-13 81.6 72 58.3
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 2.3e-13 81.3 55 69.1
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 2.3e-13 81.3 44 81.8
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 5.2e-13 80.1 55 69.1
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 2.6e-12 77.8 81 50.6
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 4.4e-12 77.0 55 67.3
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 4.4e-12 77.0 55 67.3
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 7.6e-12 76.3 55 67.3
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 7.6e-12 76.3 55 67.3
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 1.7e-11 75.1 55 67.3
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 3.7e-11 73.9 48 68.8
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.4e-10 71.2 35 85.7
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 7.1e-10 69.7 73 54.8
BcaC07g36866 Brassica carinata HOM05D012015 ORTHO05D011383 3.0e-08 64.3 49 61.2
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 8.6e-08 62.8 34 82.4
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 1.9e-07 61.6 61 49.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.3e-07 60.8 62 54.8
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 4.3e-07 60.5 60 51.7
C08p01710 Brassica napus HOM05D002592 ORTHO05D011383 1.2e-06 58.9 44 61.4


User provided reference genes

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