Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p32920 Brassica napus HOM05D005670 ORTHO05D031838 7.7e-58 226.9 110 100.0
BolC9t56127H Brassica oleracea HOM05D005670 ORTHO05D031838 2.9e-44 181.8 110 86.4
BcaC04g21348 Brassica carinata HOM05D005670 ORTHO05D031838 4.1e-43 177.9 101 90.1
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 8.7e-17 90.5 50 90.0
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 8.7e-17 90.5 50 90.0
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 8.7e-17 90.5 50 90.0
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 8.7e-17 90.5 50 90.0
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 8.7e-17 90.5 50 90.0
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 8.7e-17 90.5 50 90.0
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 9.6e-16 87.0 54 81.5
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 1.2e-15 86.7 50 86.0
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 1.6e-15 86.3 54 79.6
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 1.6e-15 86.3 50 86.0
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 1.6e-15 86.3 54 79.6
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 2.1e-15 85.9 54 79.6
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 2.8e-15 85.5 54 79.6
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 2.8e-15 85.5 54 79.6
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 2.8e-15 85.5 50 86.0
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 3.6e-15 85.1 54 79.6
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 4.7e-15 84.7 54 79.6
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 6.2e-15 84.3 54 77.8
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 8.1e-15 84.0 54 77.8
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 1.1e-14 83.6 54 77.8
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 1.1e-14 83.6 54 77.8
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 1.1e-14 83.6 54 75.9
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 1.1e-14 83.6 50 82.0
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 1.1e-14 83.6 50 82.0
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 1.1e-14 83.6 50 82.0
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 1.4e-14 83.2 54 75.9
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 1.4e-14 83.2 54 79.6
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 1.4e-14 83.2 54 75.9
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 1.4e-14 83.2 94 52.1
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 1.4e-14 83.2 54 79.6
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 1.8e-14 82.8 50 84.0
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 1.8e-14 82.8 54 77.8
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 2.4e-14 82.4 50 80.0
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 2.4e-14 82.4 54 75.9
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 2.4e-14 82.4 54 75.9
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 2.4e-14 82.4 50 80.0
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 2.4e-14 82.4 54 77.8
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 3.1e-14 82.0 50 80.0
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 3.1e-14 82.0 54 77.8
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 4.0e-14 81.6 54 75.9
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 4.0e-14 81.6 50 82.0
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 4.0e-14 81.6 54 77.8
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 5.2e-14 81.3 50 78.0
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 6.9e-14 80.9 50 80.0
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 6.9e-14 80.9 54 75.9
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 9.0e-14 80.5 54 75.9
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 9.0e-14 80.5 54 74.1
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 9.0e-14 80.5 54 75.9
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 1.2e-13 80.1 54 72.2
Os04g0680400 Oryza sativa ssp. japonica HOM05D005670 ORTHO05D007612 1.2e-13 80.1 54 74.1
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 1.2e-13 80.1 54 74.1
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 1.2e-13 80.1 50 80.0
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 1.2e-13 80.1 54 74.1
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 1.5e-13 79.7 54 75.9
Haze_05742 Corylus avellana HOM05D005670 ORTHO05D007612 2.0e-13 79.3 54 74.1
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 2.6e-13 79.0 50 76.0
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 2.6e-13 79.0 50 80.0
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 2.6e-13 79.0 50 76.0
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 2.6e-13 79.0 50 76.0
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 2.6e-13 79.0 54 74.1
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 2.6e-13 79.0 54 74.1
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 2.6e-13 79.0 54 74.1
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 4.4e-13 78.2 54 74.1
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 4.4e-13 78.2 54 74.1
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 4.4e-13 78.2 50 74.0
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 5.8e-13 77.8 54 70.4
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 5.8e-13 77.8 54 70.4
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 5.8e-13 77.8 54 72.2
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 5.8e-13 77.8 54 66.7
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 9.9e-13 77.0 54 72.2
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 1.3e-12 76.6 54 70.4
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 1.7e-12 76.3 50 74.0
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 2.2e-12 75.9 54 66.7
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 2.2e-12 75.9 54 68.5
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 3.8e-12 75.1 50 74.0
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 8.4e-12 73.9 54 63.0
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 8.4e-12 73.9 54 63.0
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 8.4e-12 73.9 54 63.0
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 8.4e-12 73.9 54 63.0
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 1.1e-11 73.6 54 64.8
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 1.1e-11 73.6 54 63.0
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 1.4e-11 73.2 54 63.0
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 1.4e-11 73.2 54 63.0
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 1.9e-11 72.8 50 70.0
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 1.9e-11 72.8 54 63.0
Rhsim06G0021500 Rhododendron simsii HOM05D005670 ORTHO05D007612 1.9e-11 72.8 51 66.7
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 2.4e-11 72.4 54 63.0
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.4e-11 72.4 50 68.0
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 2.4e-11 72.4 54 63.0
FvH4_5g20981 Fragaria vesca HOM05D005670 ORTHO05D007612 3.2e-11 72.0 57 70.2
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 3.2e-11 72.0 54 61.1
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 4.2e-11 71.6 51 70.6
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 4.2e-11 71.6 54 61.1
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 5.4e-11 71.2 54 59.3
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 1.6e-10 69.7 54 61.1
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 2.1e-10 69.3 54 63.0
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 2.1e-10 69.3 50 64.0
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 2.1e-10 69.3 50 64.0
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 2.7e-10 68.9 54 61.1
BcaB01g01849 Brassica carinata HOM05D001170 ORTHO05D006602 2.3e-09 65.9 40 82.5
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 3.3e-08 62.0 50 58.0
Sp6g04010 Schrenkiella parvula HOM05D001170 ORTHO05D006602 7.3e-08 60.8 40 77.5
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 1.3e-07 60.1 50 56.0
AL6G48460 Arabidopsis lyrata HOM05D001170 ORTHO05D006602 1.6e-07 59.7 40 75.0
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 1.6e-07 59.7 53 52.8
Thhalv10028614m.g Eutrema salsugineum HOM05D001170 ORTHO05D006602 2.1e-07 59.3 40 75.0
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 2.1e-07 59.3 54 53.7
Aa31LG9G9540 Aethionema arabicum HOM05D001170 ORTHO05D006602 2.8e-07 58.9 40 75.0
AT4G04950 Arabidopsis thaliana HOM05D001170 ORTHO05D006602 3.6e-07 58.5 40 72.5
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 3.6e-07 58.5 54 51.9
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 4.8e-07 58.2 54 48.1
Carub.0006s3288 Capsella rubella HOM05D001170 ORTHO05D006602 6.2e-07 57.8 40 72.5
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 6.2e-07 57.8 46 56.5
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 8.1e-07 57.4 50 54.0
CARHR252590 Cardamine hirsuta HOM05D001170 ORTHO05D006602 1.1e-06 57.0 40 72.5
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.1e-06 55.5 48 62.5


User provided reference genes

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