Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 8.3e-205 716.8 370 100.0
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 2.6e-198 695.3 370 93.5
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 4.4e-198 694.5 365 94.2
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 1.4e-183 646.4 368 87.8
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 9.6e-177 623.6 371 84.9
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 5.8e-174 614.4 371 83.0
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 1.4e-172 609.8 371 83.3
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 8.7e-170 600.5 327 92.4
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 1.1e-169 600.1 328 91.8
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 1.5e-169 599.7 362 82.6
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 4.8e-168 594.7 362 84.5
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 1.5e-166 589.7 371 79.5
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 1.2e-142 510.4 365 73.7
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 8.4e-141 504.2 360 68.3
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 5.9e-126 454.9 361 67.6
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 7.7e-126 454.5 316 64.2
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 7.2e-124 448.0 362 64.4
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 1.6e-123 446.8 363 65.0
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 6.1e-123 444.9 318 65.4
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 6.1e-123 444.9 367 64.9
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 1.8e-122 443.4 316 63.3
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.8e-122 443.4 362 66.0
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 3.0e-122 442.6 363 64.7
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 3.9e-122 442.2 362 65.2
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 5.1e-122 441.8 362 64.9
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.1e-121 440.7 316 62.3
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 2.2e-120 436.4 318 61.9
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 3.7e-120 435.6 368 64.1
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 4.8e-120 435.3 319 62.4
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 2.6e-118 429.5 370 63.8
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 2.6e-118 429.5 316 61.1
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 1.7e-117 426.8 319 60.2
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 1.1e-116 424.1 319 62.7
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.5e-116 423.7 336 58.3
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 1.9e-116 423.3 361 60.7
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 2.5e-116 422.9 318 60.7
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 2.5e-116 422.9 379 53.6
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 4.2e-116 422.2 315 61.0
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 4.2e-116 422.2 361 56.8
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 1.2e-115 420.6 316 62.7
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 3.6e-115 419.1 361 55.1
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 3.6e-115 419.1 319 59.2
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 8.0e-115 417.9 320 60.6
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 1.4e-114 417.2 315 60.0
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 3.9e-114 415.6 319 59.9
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 6.7e-114 414.8 317 59.9
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 6.7e-114 414.8 317 59.0
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 8.8e-114 414.5 315 59.4
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.6e-113 412.9 315 59.4
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 5.7e-113 411.8 317 57.7
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.3e-112 410.6 317 57.4
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 2.2e-112 409.8 298 62.4
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.8e-111 406.8 316 61.1
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 2.4e-111 406.4 316 57.3
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 2.4e-111 406.4 357 55.5
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 7.0e-111 404.8 320 59.4
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 9.1e-111 404.4 309 60.5
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 9.1e-111 404.4 319 59.6
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 2.6e-110 402.9 318 59.1
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 3.5e-110 402.5 317 56.2
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 3.5e-110 402.5 317 57.7
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 1.0e-109 401.0 317 56.5
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 1.7e-109 400.2 318 58.2
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 2.9e-109 399.4 317 56.8
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 3.8e-109 399.1 318 58.8
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 1.1e-108 397.5 318 57.5
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.5e-108 397.1 318 59.7
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 1.2e-107 394.0 360 51.9
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 3.6e-107 392.5 320 55.6
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 1.4e-106 390.6 361 54.3
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 5.2e-106 388.7 319 58.3
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 6.8e-106 388.3 318 56.9
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 8.8e-106 387.9 357 56.9
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 1.2e-105 387.5 360 59.2
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 1.5e-105 387.1 360 60.3
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 2.0e-105 386.7 320 58.4
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 3.4e-105 386.0 362 54.4
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 1.7e-104 383.6 360 59.7
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 3.7e-104 382.5 319 57.4
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 4.8e-104 382.1 319 57.1
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 3.1e-103 379.4 362 52.5
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 2.0e-102 376.7 364 56.0
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 3.5e-102 375.9 315 55.6
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 1.0e-101 374.4 362 58.8
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 1.0e-101 374.4 321 53.0
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 1.3e-101 374.0 367 54.5
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 3.8e-101 372.5 288 58.3
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 6.5e-101 371.7 324 54.9
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 8.5e-101 371.3 363 59.0
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 8.5e-101 371.3 364 59.1
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.1e-99 366.7 317 56.8
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 2.1e-99 366.7 317 54.9
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 1.0e-98 364.4 362 52.2
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 1.5e-97 360.5 315 54.3
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 9.8e-97 357.8 287 58.2
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 2.8e-96 356.3 316 53.8
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 1.8e-95 353.6 362 51.9
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 5.4e-95 352.1 357 52.1
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 3.3e-92 342.8 323 53.3
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 6.8e-90 335.1 318 50.6
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 2.0e-89 333.6 316 50.9
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 5.7e-89 332.0 322 50.3
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 1.7e-85 320.5 316 49.4
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.5e-84 317.4 361 53.5
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 7.3e-84 315.1 315 48.9
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 1.7e-80 303.9 332 47.0
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.1e-76 291.2 398 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 3.3e-76 289.7 351 43.0
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 3.3e-76 289.7 365 44.7
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 9.5e-76 288.1 328 46.0
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 1.5e-73 280.8 243 51.4
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 4.9e-72 275.8 355 40.8
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 5.4e-71 272.3 318 44.7
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 9.2e-71 271.6 321 46.1
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.3e-69 267.7 336 39.9
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 1.3e-69 267.7 332 42.5
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 9.5e-68 261.5 299 56.5
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 8.9e-66 255.0 319 44.2
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 8.4e-64 248.4 286 44.4
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 8.4e-64 248.4 192 58.3
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 1.3e-61 241.1 350 40.3
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 8.6e-61 238.4 319 43.6
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 7.6e-57 225.3 136 76.5
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 5.4e-55 219.2 382 33.8
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 3.6e-51 206.5 238 44.5
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 5.5e-39 166.0 184 44.6
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 4.6e-38 162.9 100 68.0
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 4.5e-33 146.4 155 47.1
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 1.1e-31 141.7 89 70.8
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 2.1e-30 137.5 83 69.9
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 1.1e-28 131.7 155 44.5
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 5.7e-28 129.4 327 31.2
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 1.3e-27 128.3 116 51.7
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 2.4e-26 124.0 106 54.7
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 5.3e-26 122.9 390 27.7
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.1e-23 115.2 115 49.6
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 1.6e-22 111.3 156 38.5
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 1.8e-18 97.8 63 61.9
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 3.1e-18 97.1 72 55.6
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 2.0e-17 94.4 334 26.3
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.7e-16 91.3 90 47.8
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 2.1e-14 84.3 55 70.9
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 3.6e-14 83.6 98 41.8
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 3.6e-14 83.6 83 43.4
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 2.0e-12 77.8 45 66.7
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.0e-08 65.5 40 67.5
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 5.0e-08 63.2 58 44.8


User provided reference genes

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