Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1364.4 642 100.0
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1364.4 642 100.0
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1349.0 642 98.8
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1347.4 642 98.6
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1323.1 620 99.7
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1313.1 642 95.8
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1293.9 643 94.4
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1290.8 643 93.8
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 0.0e+00 1290.8 642 94.9
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 0.0e+00 1286.6 642 94.5
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1284.2 670 90.9
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1283.9 670 90.3
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 0.0e+00 1281.5 642 94.2
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 0.0e+00 1274.2 642 93.5
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1268.1 642 92.4
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 0.0e+00 1237.2 643 90.8
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1177.5 663 82.7
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 0.0e+00 1121.7 549 95.6
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1094.3 631 78.0
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1093.6 630 79.0
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1093.6 635 78.3
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1090.5 646 76.6
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1088.6 629 78.7
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1085.9 609 79.6
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1081.6 635 77.8
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1081.6 628 78.5
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1080.5 630 77.1
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1077.8 628 77.5
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1077.0 604 79.0
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 649 76.1
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 605 79.8
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 4.4e-312 1074.3 629 77.1
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 4.4e-312 1074.3 609 79.0
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 4.4e-312 1073.9 630 77.8
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 4.4e-312 1073.5 654 74.8
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.8e-312 1072.8 629 76.6
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.8e-311 1072.0 629 76.6
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 4.0e-311 1070.8 629 76.2
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 6.6e-311 1070.1 628 77.5
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 4.3e-310 1067.4 605 79.5
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 5.7e-310 1067.0 642 76.9
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 9.7e-310 1066.2 609 77.3
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 2.2e-309 1065.1 631 77.0
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 2.8e-309 1064.7 642 76.8
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 3.7e-309 1064.3 629 76.5
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 1.8e-308 1062.0 632 76.7
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 1.8e-308 1062.0 608 78.5
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 2.4e-308 1061.6 631 76.2
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 4.1e-308 1060.8 632 76.7
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 4.1e-308 1060.8 631 76.2
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 6.9e-308 1060.1 604 78.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 1.2e-307 1059.3 609 77.8
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.0e-306 1056.2 635 74.2
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 1.3e-306 1055.8 638 75.4
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 2.2e-306 1055.0 625 75.8
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 6.5e-306 1053.5 602 78.1
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 2.5e-305 1051.6 631 75.8
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 1.6e-304 1048.9 642 74.3
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 3.6e-304 1047.7 602 77.9
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 6.1e-304 1047.0 612 76.6
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 3.9e-303 1044.3 612 76.8
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.1e-302 1042.7 627 75.6
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.1e-302 1042.7 621 75.5
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.5e-302 1041.6 612 76.6
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 2.5e-302 1041.6 628 75.2
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 3.1e-300 1034.6 602 77.4
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 4.1e-300 1034.2 630 73.8
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 5.3e-300 1033.9 635 74.6
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.3e-298 1029.2 604 77.2
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 2.9e-298 1028.1 600 78.2
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 2.9e-298 1028.1 774 63.7
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.1e-296 1021.9 603 77.4
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 3.6e-296 1021.1 630 73.5
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 5.1e-295 1017.3 631 73.4
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.4e-292 1009.2 738 65.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 2.0e-291 1005.4 688 68.8
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 7.7e-291 1003.4 629 72.5
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 5.5e-289 997.3 606 74.8
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 3.3e-286 988.0 602 74.9
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.3e-285 986.1 821 58.2
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 5.9e-283 977.2 605 74.5
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.6e-280 969.1 666 68.0
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.6e-278 961.8 666 67.6
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.5e-273 946.0 603 71.6
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 1.6e-272 942.6 609 71.3
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.4e-271 939.5 557 76.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 5.4e-268 927.5 545 77.2
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.9e-265 919.1 538 78.1
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.8e-264 915.2 557 74.3
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.7e-261 906.0 577 72.4
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 3.2e-260 901.7 551 76.2
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.0e-258 896.7 611 68.6
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 6.2e-256 887.5 611 68.9
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 6.8e-255 884.0 566 71.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.5e-254 882.9 558 72.4
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.2e-253 879.0 621 66.8
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.2e-244 848.6 609 67.2
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 1.7e-242 842.8 572 67.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.9e-241 839.3 649 60.9
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 9.5e-241 837.0 606 63.0
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 9.9e-230 800.4 609 63.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.2e-229 799.3 637 58.4
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 6.0e-227 791.2 633 58.0
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 5.1e-218 761.5 492 69.7
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 7.9e-211 737.6 557 61.8
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.6e-208 729.9 446 75.8
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.3e-194 682.9 411 74.9
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.7e-184 650.2 461 66.8
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.6e-174 617.1 353 78.5
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 9.4e-172 607.8 382 73.0
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 4.7e-171 605.5 443 65.5
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.0e-121 440.7 246 79.7
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 4.9e-120 436.0 467 49.0
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 6.6e-117 425.6 257 75.9
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 6.0e-86 322.8 202 74.3
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.9e-79 301.2 146 90.4
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 7.4e-76 289.3 188 68.1
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 7.7e-73 279.3 178 71.9
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 5.3e-58 229.9 122 84.4
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.2e-56 224.6 130 76.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.7e-51 208.4 340 37.4
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.2e-48 198.0 122 72.1
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.5e-48 196.4 161 54.0
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 8.8e-45 186.0 105 79.0
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.0e-40 172.6 83 89.2
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.6e-36 157.9 121 58.7
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.3e-35 155.6 115 70.4
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.2e-28 132.5 87 70.1
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.2e-28 132.5 234 35.0
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 2.0e-28 131.7 72 81.9
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.7e-25 121.3 87 65.5
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.7e-25 121.3 87 65.5
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.6e-24 116.7 148 45.3
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.6e-24 116.3 94 66.0
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 9.5e-23 112.8 225 29.8
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 8.9e-21 106.3 51 84.3
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.5e-20 105.5 205 29.8
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 4.4e-20 104.0 83 65.1
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 4.4e-20 104.0 401 22.9
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.4e-18 99.0 138 43.5
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.9e-16 90.9 78 55.1
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.1e-16 90.5 55 70.9
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.1e-16 90.5 55 70.9
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 9.5e-15 86.3 69 62.3
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.6e-14 85.5 55 67.3
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-14 85.5 79 53.2
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 2.8e-14 84.7 79 55.7
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.5e-12 76.6 50 68.0
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.5e-12 76.6 50 68.0
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 1.3e-08 65.9 264 25.8
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 3.9e-08 64.3 34 64.7
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 3.9e-08 64.3 257 24.9
EL10Ac1g02358 Beta vulgaris HOM05D006117 ORTHO05D007996 5.1e-08 63.9 218 27.5
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 6.6e-08 63.5 260 26.5
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 1.5e-07 62.4 226 26.5
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 1.5e-07 62.4 264 25.4
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 1.9e-07 62.0 261 24.5
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 3.3e-07 61.2 260 25.4
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 4.3e-07 60.8 261 24.9
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 5.6e-07 60.5 263 26.2
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 5.6e-07 60.5 263 26.2
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 7.3e-07 60.1 259 25.5
FvH4_2g32820 Fragaria vesca HOM05D006117 ORTHO05D007996 9.5e-07 59.7 259 25.5
Actinidia10214 Actinidia chinensis HOM05D006117 ORTHO05D007996 1.2e-06 59.3 263 25.1
Cc10_g05140 Coffea canephora HOM05D006117 ORTHO05D007996 1.2e-06 59.3 265 24.9
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 1.6e-06 58.9 258 25.2
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 2.1e-06 58.5 260 24.2
Os03g0730000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 2.8e-06 58.2 259 25.1
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 3.6e-06 57.8 259 23.6
Sc15g0005470 Simmondsia chinensis HOM05D006117 ORTHO05D007996 3.6e-06 57.8 215 25.6
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 4.7e-06 57.4 265 24.9
arahy.Tifrunner.gnm1.ann1.NM5DTL Arachis hypogaea HOM05D006117 ORTHO05D007996 8.1e-06 56.6 253 25.3


User provided reference genes

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