Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 2.6e-65 251.9 127 100.0
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 2.6e-65 251.9 127 100.0
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-45 186.8 97 95.9
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 2.5e-44 182.2 123 79.7
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 4.9e-40 167.9 115 74.8
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 8.4e-40 167.2 112 75.9
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.7e-38 162.2 112 71.4
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 6.0e-38 161.0 112 71.4
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 7.9e-38 160.6 114 69.3
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 7.9e-38 160.6 114 69.3
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 8.7e-37 157.1 113 68.1
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 3.3e-36 155.2 111 67.6
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 6.2e-35 151.0 114 67.5
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 6.2e-35 151.0 114 67.5
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 6.2e-35 151.0 114 67.5
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 1.4e-34 149.8 112 65.2
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 2.4e-34 149.1 112 61.6
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 3.5e-30 135.2 116 57.8
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 5.8e-25 117.9 103 60.2
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 1.9e-23 112.8 122 46.7
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 7.1e-23 110.9 119 46.2
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.2e-22 110.2 111 49.5
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.2e-22 110.2 119 46.2
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 3.9e-21 105.1 109 46.8
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 3.9e-21 105.1 112 43.8
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 6.7e-21 104.4 112 44.6
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.5e-20 103.2 109 45.9
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.9e-20 102.8 104 47.1
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 2.5e-20 102.4 113 42.5
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 3.3e-20 102.1 109 45.0
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 5.7e-20 101.3 105 45.7
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 5.7e-20 101.3 109 45.0
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 5.7e-20 101.3 104 47.1
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 1.3e-19 100.1 113 40.7
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.3e-19 100.1 122 42.6
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.6e-19 99.8 112 45.5
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 2.2e-19 99.4 111 43.2
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 2.8e-19 99.0 111 42.3
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 3.7e-19 98.6 112 44.6
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 4.8e-19 98.2 123 42.3
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 6.3e-19 97.8 112 44.6
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 1.4e-18 96.7 112 45.5
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.1e-18 95.5 112 43.8
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 4.1e-18 95.1 112 41.1
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 4.1e-18 95.1 109 44.0
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 4.1e-18 95.1 104 43.3
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 4.1e-18 95.1 106 44.3
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 9.0e-18 94.0 106 41.5
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.5e-17 93.2 105 45.7
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.5e-17 93.2 112 45.5
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 1.5e-17 93.2 109 42.2
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.5e-17 93.2 112 40.2
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 1.5e-17 93.2 106 41.5
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 2.6e-17 92.4 106 43.4
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 4.5e-17 91.7 105 41.9
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.5e-17 91.7 109 41.3
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 4.5e-17 91.7 105 42.9
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 5.9e-17 91.3 56 76.8
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 7.6e-17 90.9 112 40.2
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 7.6e-17 90.9 106 40.6
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 1.0e-16 90.5 106 40.6
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 1.0e-16 90.5 103 40.8
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 1.0e-16 90.5 112 42.9
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 1.3e-16 90.1 105 40.0
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.3e-16 90.1 109 40.4
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 1.3e-16 90.1 126 40.5
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 1.3e-16 90.1 103 38.8
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 1.3e-16 90.1 109 41.3
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 2.2e-16 89.4 109 38.5
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 2.2e-16 89.4 112 41.1
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.2e-16 89.4 109 40.4
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.8e-16 88.6 109 39.4
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.8e-16 88.6 109 39.4
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.8e-16 88.6 109 39.4
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 5.0e-16 88.2 110 40.9
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 5.0e-16 88.2 103 39.8
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 5.0e-16 88.2 106 39.6
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 6.5e-16 87.8 54 77.8
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 6.5e-16 87.8 54 77.8
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 6.5e-16 87.8 54 77.8
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.1e-15 87.0 108 40.7
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.5e-15 85.9 103 39.8
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 2.5e-15 85.9 89 43.8
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 3.2e-15 85.5 54 75.9
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 4.2e-15 85.1 104 37.5
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 4.2e-15 85.1 110 40.0
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 5.5e-15 84.7 108 41.7
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 9.4e-15 84.0 108 41.7
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.6e-14 83.2 103 41.7
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 2.7e-14 82.4 108 40.7
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 4.6e-14 81.6 104 39.4
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 1.0e-13 80.5 99 41.4
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.4e-13 80.1 106 36.8
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.8e-13 79.7 106 35.8
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.0e-13 79.0 92 44.6
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 3.9e-13 78.6 110 41.8
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 5.1e-13 78.2 107 36.4
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 6.7e-13 77.8 108 33.3
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 1.1e-12 77.0 109 37.6
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 1.5e-12 76.6 110 36.4
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 1.5e-12 76.6 110 37.3
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 1.9e-12 76.3 116 37.1
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.5e-12 75.9 71 47.9
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.3e-12 75.5 106 37.7
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 5.7e-12 74.7 85 41.2
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 5.7e-12 74.7 116 36.2
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 2.8e-11 72.4 58 62.1
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.8e-11 72.4 77 46.8
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 3.7e-11 72.0 112 33.0
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 3.7e-11 72.0 62 51.6
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.8e-10 69.7 84 45.2
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 2.0e-09 66.2 103 34.0
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 3.4e-09 65.5 87 35.6
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 5.9e-09 64.7 103 31.1
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 2.2e-08 62.8 82 41.5
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 8.5e-08 60.8 83 36.1
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 8.5e-08 60.8 113 34.5
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 9.4e-07 57.4 100 33.0
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 1.6e-06 56.6 64 39.1
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 3.6e-06 55.5 57 43.9


User provided reference genes

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