Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.8e-82 309.3 165 100.0
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.0e-73 279.3 153 98.0
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.7e-61 239.6 130 100.0
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.7e-61 239.6 130 100.0
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 6.6e-61 237.7 130 99.2
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.8e-58 229.6 130 97.7
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 4.4e-57 224.9 130 95.4
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 8.3e-56 220.7 130 92.3
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 3.2e-55 218.8 130 93.1
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 5.4e-55 218.0 130 92.3
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.3e-53 213.4 127 92.9
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 5.0e-53 211.5 130 88.5
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 6.6e-53 211.1 130 88.5
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 1.5e-52 209.9 130 87.7
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.3e-52 208.8 130 86.9
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 3.3e-52 208.8 130 86.9
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 5.6e-52 208.0 130 87.7
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 9.5e-52 207.2 130 86.2
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.2e-51 206.8 130 86.2
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 1.6e-51 206.5 130 86.2
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 1.6e-51 206.5 130 86.2
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 3.6e-51 205.3 130 85.4
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 3.6e-51 205.3 130 85.4
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 8.1e-51 204.1 130 83.8
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.4e-50 203.4 130 84.6
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 2.2e-48 196.1 130 80.8
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.1e-47 191.8 103 98.1
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.3e-45 186.8 128 76.6
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.3e-45 186.0 128 77.3
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.9e-45 185.3 128 77.3
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 3.9e-45 185.3 128 77.3
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 5.1e-45 184.9 128 78.1
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.6e-45 184.5 128 76.6
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 6.6e-45 184.5 129 76.0
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 6.6e-45 184.5 128 75.0
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 8.6e-45 184.1 128 75.8
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 8.6e-45 184.1 128 75.8
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.1e-44 183.7 126 76.2
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 1.5e-44 183.3 128 75.8
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.5e-44 182.6 128 75.8
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 2.5e-44 182.6 128 77.3
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 5.6e-44 181.4 134 72.4
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 5.6e-44 181.4 128 75.0
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 7.3e-44 181.0 129 76.0
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 9.5e-44 180.6 128 75.8
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.2e-43 180.3 129 76.0
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.1e-43 179.5 128 75.8
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 2.1e-43 179.5 129 74.4
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.8e-43 179.1 128 75.0
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 2.8e-43 179.1 128 75.8
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.8e-43 179.1 128 74.2
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 3.6e-43 178.7 128 75.0
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 6.2e-43 177.9 127 74.8
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 8.1e-43 177.6 126 74.6
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 8.1e-43 177.6 129 73.6
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.8e-42 176.4 127 76.4
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 4.0e-42 175.3 123 75.6
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 5.2e-42 174.9 128 74.2
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 6.8e-42 174.5 128 74.2
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 8.9e-42 174.1 120 76.7
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 8.9e-42 174.1 129 71.3
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.2e-41 173.7 154 62.3
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.2e-41 173.7 128 73.4
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.5e-41 173.3 157 62.4
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.5e-41 173.3 128 73.4
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 2.0e-41 172.9 128 73.4
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 2.6e-41 172.6 128 72.7
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 3.4e-41 172.2 125 73.6
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 3.4e-41 172.2 126 74.6
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.4e-41 171.8 126 73.8
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 4.4e-41 171.8 128 71.1
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 5.8e-41 171.4 128 71.1
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 5.8e-41 171.4 129 71.3
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 5.8e-41 171.4 126 73.8
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 7.6e-41 171.0 126 70.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 9.9e-41 170.6 126 73.8
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 9.9e-41 170.6 128 70.3
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.3e-40 170.2 128 70.3
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.3e-40 170.2 129 69.0
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 2.2e-40 169.5 126 72.2
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.9e-40 169.1 128 71.1
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.9e-40 169.1 128 70.3
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 2.9e-40 169.1 126 74.6
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.8e-40 168.7 126 73.8
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 4.9e-40 168.3 126 70.6
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 4.9e-40 168.3 128 69.5
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 6.4e-40 167.9 125 71.2
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 6.4e-40 167.9 128 69.5
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 6.4e-40 167.9 126 73.8
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 8.4e-40 167.5 158 60.1
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.4e-39 166.0 121 73.6
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.2e-39 165.6 121 73.6
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 4.1e-39 165.2 126 69.0
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 5.4e-39 164.9 125 70.4
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 9.2e-39 164.1 121 69.4
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.2e-38 163.7 128 69.5
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 7.8e-38 161.0 129 66.7
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.0e-37 160.6 127 68.5
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 2.3e-37 159.5 121 66.9
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 3.0e-37 159.1 121 70.2
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 6.6e-37 157.9 127 66.9
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.1e-36 157.1 130 64.6
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 3.3e-36 155.6 124 66.9
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 3.3e-36 155.6 118 71.2
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 4.3e-36 155.2 124 66.9
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 7.3e-36 154.5 99 82.8
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 9.6e-36 154.1 125 64.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 2.8e-35 152.5 101 77.2
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 6.2e-35 151.4 116 69.0
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 8.1e-35 151.0 107 75.7
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 8.1e-35 151.0 101 77.2
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 6.9e-34 147.9 154 54.5
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 2.0e-33 146.4 111 73.9
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 3.4e-33 145.6 112 73.2
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.9e-31 139.8 97 78.4
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 7.1e-31 137.9 120 60.8
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.3e-29 132.9 121 58.7
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 1.1e-28 130.6 94 74.5
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 7.3e-28 127.9 123 56.9
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.4e-25 119.0 119 50.4
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 9.9e-25 117.5 79 75.9
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.0e-21 107.5 78 71.8
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 2.3e-21 106.3 79 69.6
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.5e-20 103.6 75 74.7
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 9.6e-20 100.9 74 71.6
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 4.0e-18 95.5 88 60.2
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 6.9e-18 94.7 86 67.4
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.3e-13 80.5 55 74.5
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 8.7e-13 77.8 48 87.5
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 8.7e-13 77.8 48 87.5
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.9e-12 76.6 116 38.8
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 2.8e-11 72.8 116 40.5
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 6.2e-11 71.6 66 57.6
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 8.1e-11 71.2 57 66.7
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 1.4e-10 70.5 128 38.3
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 2.0e-09 66.6 39 92.3
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 4.5e-09 65.5 54 61.1
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 3.8e-08 62.4 33 97.0


User provided reference genes

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