Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 1.4e-125 453.0 227 100.0
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 4.0e-125 451.4 227 99.6
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 8.9e-125 450.3 227 99.1
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 6.8e-109 397.5 264 79.2
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.9e-98 362.8 252 77.0
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 2.7e-81 305.8 220 75.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 2.7e-73 279.3 284 58.1
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 2.7e-73 279.3 284 58.1
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.0e-72 277.3 288 57.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 6.7e-72 274.6 284 57.4
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-71 273.9 285 57.9
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-71 273.9 284 57.4
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.1e-71 273.9 284 57.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.1e-53 212.2 286 51.0
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 5.9e-52 208.4 294 48.0
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.7e-51 206.8 288 49.3
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 6.5e-51 204.9 286 50.0
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 4.2e-50 202.2 284 50.4
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.8e-48 196.8 291 49.5
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 3.2e-42 176.0 289 46.0
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 4.7e-41 172.2 264 46.2
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.7e-38 162.5 276 44.6
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.8e-38 162.2 276 44.6
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-36 157.5 276 43.5
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.5e-34 150.6 294 41.8
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 4.2e-34 149.1 291 41.9
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 9.4e-34 147.9 290 42.8
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.6e-33 147.1 287 40.4
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 3.6e-33 146.0 277 43.7
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.7e-33 145.6 287 41.1
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 6.1e-33 145.2 288 39.9
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.0e-32 144.4 287 41.1
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.8e-32 143.7 288 42.4
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 2.3e-32 143.3 289 41.5
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.0e-32 142.9 286 42.7
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 3.0e-32 142.9 288 41.0
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 6.8e-32 141.7 283 41.3
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.0e-31 140.2 290 42.4
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 5.7e-31 138.7 261 40.2
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 9.8e-31 137.9 290 40.3
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.2e-30 136.7 286 39.5
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 2.8e-30 136.3 177 50.3
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 6.3e-30 135.2 290 37.6
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.1e-29 134.4 178 50.6
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.4e-29 134.0 285 41.1
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.4e-29 134.0 289 38.8
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.8e-29 133.7 178 50.6
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.8e-29 133.7 298 38.6
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 2.4e-29 133.3 287 40.8
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 3.1e-29 132.9 288 39.2
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 3.1e-29 132.9 289 40.1
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 3.1e-29 132.9 289 41.2
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.1e-29 132.5 296 38.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 4.1e-29 132.5 288 37.5
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 5.4e-29 132.1 303 38.9
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 9.1e-29 131.3 289 38.4
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 9.1e-29 131.3 289 39.8
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 9.1e-29 131.3 294 38.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.2e-28 131.0 286 40.2
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 2.0e-28 130.2 275 38.9
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-28 130.2 301 38.2
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 2.7e-28 129.8 287 40.8
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.5e-28 129.0 167 47.3
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 4.5e-28 129.0 284 39.8
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 4.5e-28 129.0 296 38.2
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 5.9e-28 128.6 290 40.3
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 7.7e-28 128.3 286 38.5
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.0e-27 127.9 292 39.0
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.0e-27 127.9 292 39.7
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.3e-27 127.5 284 40.1
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.3e-27 127.5 300 38.3
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 2.9e-27 126.3 288 39.2
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 2.9e-27 126.3 283 38.2
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 3.8e-27 125.9 284 36.6
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 8.5e-27 124.8 286 38.5
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.1e-26 124.4 283 38.9
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.5e-26 124.0 303 38.3
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 2.5e-26 123.2 317 38.2
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 2.5e-26 123.2 286 36.0
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.5e-26 123.2 282 39.0
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 3.2e-26 122.9 285 39.6
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.2e-26 122.9 280 37.5
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 3.2e-26 122.9 317 38.2
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 7.2e-26 121.7 303 39.6
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 9.4e-26 121.3 303 38.3
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.2e-25 120.9 172 47.1
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.6e-25 120.6 290 34.5
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 2.1e-25 120.2 290 38.6
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.7e-25 119.8 306 37.6
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 3.6e-25 119.4 287 36.6
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 3.6e-25 119.4 289 34.3
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.0e-24 117.9 266 39.8
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.0e-24 117.9 291 37.5
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.8e-24 117.1 291 39.9
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.3e-24 116.7 282 39.4
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 3.0e-24 116.3 296 37.8
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 4.0e-24 115.9 292 37.7
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 5.2e-24 115.5 100 66.0
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 8.8e-24 114.8 277 36.8
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 2.6e-23 113.2 287 37.3
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 3.4e-23 112.8 289 36.3
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 3.4e-23 112.8 70 75.7
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 4.4e-23 112.5 289 36.0
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.7e-23 112.1 193 44.0
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 7.5e-23 111.7 243 39.9
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 9.8e-23 111.3 210 41.0
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 9.8e-23 111.3 288 35.1
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.3e-22 110.9 296 38.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.8e-22 109.8 292 35.6
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 6.3e-22 108.6 223 38.1
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 8.3e-22 108.2 216 38.4
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.4e-21 106.7 283 33.6
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.4e-21 106.7 253 37.5
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.1e-21 106.3 283 34.3
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 7.0e-21 105.1 289 36.0
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 7.0e-21 105.1 287 35.9
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 9.1e-21 104.8 207 36.7
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 2.7e-20 103.2 273 37.4
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.1e-18 97.8 261 36.8
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 1.9e-18 97.1 183 42.1
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 2.5e-18 96.7 290 31.4
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 2.5e-18 96.7 283 35.3
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 4.3e-18 95.9 270 30.7
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.6e-18 95.5 224 38.4
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 2.1e-17 93.6 288 35.1
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 4.0e-16 89.4 175 37.7
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 5.2e-16 89.0 100 54.0
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 6.8e-16 88.6 175 37.7
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 3.4e-15 86.3 93 54.8
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 3.4e-15 86.3 205 34.1
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 9.8e-15 84.7 59 72.9
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 9.8e-15 84.7 51 82.4
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 9.8e-15 84.7 51 82.4
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 2.9e-14 83.2 298 31.2
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.7e-14 82.8 91 52.7
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 4.9e-14 82.4 83 51.8
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.1e-13 81.3 183 36.1
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 1.4e-13 80.9 184 35.9
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 4.1e-13 79.3 237 35.0
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 5.4e-13 79.0 93 51.6
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-12 77.8 91 50.5
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 2.7e-12 76.6 264 33.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 4.6e-12 75.9 269 31.6
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 7.8e-12 75.1 110 41.8
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 1.0e-11 74.7 80 48.8
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 4.0e-08 62.8 81 51.9
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 8.9e-08 61.6 71 47.9
BolC4t25439H Brassica oleracea HOM05D038158 ORTHO05D042869 1.2e-07 61.2 55 63.6
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.2e-07 61.2 56 53.6
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.7e-06 57.4 60 55.0


User provided reference genes

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