Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 7.8e-183 643.7 324 100.0
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 2.8e-180 635.2 335 96.7
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 7.4e-157 557.4 335 87.2
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 7.4e-157 557.4 335 87.2
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.8e-147 526.2 342 85.4
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.2e-145 519.2 341 81.2
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 9.7e-141 503.8 342 79.2
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.8e-139 499.6 340 79.1
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.7e-135 485.7 345 76.2
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 7.9e-135 484.2 340 77.1
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 3.9e-134 481.9 340 78.8
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 4.3e-133 478.4 340 78.2
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 5.7e-133 478.0 341 78.6
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 5.7e-133 478.0 341 78.9
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 5.7e-133 478.0 340 78.8
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 6.3e-132 474.6 339 76.4
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.8e-131 473.0 344 75.3
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 7.4e-117 424.5 342 69.6
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.4e-110 403.7 340 68.8
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.8e-110 403.3 344 67.2
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 8.8e-110 401.0 338 68.3
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.4e-109 398.7 347 65.1
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 9.7e-109 397.5 334 69.2
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.3e-108 397.1 339 67.8
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 4.8e-108 395.2 340 66.5
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 7.0e-107 391.3 336 67.3
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 7.0e-107 391.3 336 67.3
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 5.5e-104 381.7 330 67.0
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 7.2e-104 381.3 339 65.8
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 7.2e-104 381.3 339 65.8
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 3.6e-103 379.0 319 67.4
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.3e-100 370.5 339 65.2
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.7e-100 370.2 323 63.2
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.3e-100 368.2 317 65.9
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 6.3e-100 368.2 323 63.5
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.1e-99 367.5 325 62.8
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.8e-99 366.7 324 63.0
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 7.0e-99 364.8 325 62.8
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 9.1e-99 364.4 325 62.5
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 5.9e-98 361.7 318 61.6
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.7e-97 360.1 341 61.0
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.1e-96 357.5 327 62.7
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.5e-96 357.1 342 61.1
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 3.3e-96 355.9 341 61.3
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.2e-96 355.5 324 61.4
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 1.6e-95 353.6 346 59.2
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 3.6e-95 352.4 327 61.5
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 1.0e-94 350.9 348 57.5
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.8e-94 350.1 324 60.5
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.8e-94 350.1 328 59.8
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.5e-93 347.1 333 58.6
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.0e-93 346.7 323 60.7
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.4e-93 345.9 323 60.7
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.2e-92 343.2 324 61.7
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.2e-92 343.2 343 58.0
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.8e-92 342.8 326 60.4
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 3.7e-92 342.4 327 60.2
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 3.7e-92 342.4 339 57.8
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.4e-91 338.6 324 60.2
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.2e-90 337.4 324 61.1
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.6e-90 337.0 329 59.3
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.0e-90 336.7 342 57.0
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.0e-90 336.7 324 59.9
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 3.5e-90 335.9 329 59.3
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 7.8e-90 334.7 324 60.8
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.0e-89 334.3 343 54.5
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.0e-89 334.3 332 58.1
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.3e-89 334.0 324 59.6
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.7e-89 333.6 345 59.7
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 6.6e-89 331.6 321 60.1
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-88 330.5 343 58.9
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.5e-88 330.5 337 57.0
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 4.3e-88 328.9 326 58.0
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.6e-87 327.0 344 57.0
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.6e-87 325.9 332 57.2
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 3.6e-87 325.9 329 58.7
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.0e-87 324.7 371 53.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 4.0e-86 322.4 340 55.3
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 4.0e-86 322.4 327 57.8
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 6.8e-86 321.6 408 50.0
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.2e-85 320.9 326 56.7
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.2e-85 320.9 338 58.0
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 4.4e-85 318.9 332 56.6
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 4.4e-85 318.9 324 56.5
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 5.8e-85 318.5 329 56.5
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 2.2e-84 316.6 340 54.7
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 8.3e-84 314.7 326 56.7
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 3.2e-83 312.8 318 57.9
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.4e-83 312.0 346 53.8
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 7.0e-83 311.6 344 57.0
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 1.2e-82 310.8 332 55.4
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 3.5e-82 309.3 338 56.5
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.6e-82 308.9 348 52.6
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.0e-81 307.8 346 57.5
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.3e-81 307.4 289 59.9
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.3e-81 307.4 328 56.4
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 2.3e-81 306.6 343 55.7
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 2.3e-81 306.6 396 49.2
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 5.0e-81 305.4 325 54.8
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 4.3e-80 302.4 323 54.2
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 5.6e-80 302.0 341 55.1
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 5.6e-80 302.0 329 55.6
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 5.6e-80 302.0 344 55.5
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 9.5e-80 301.2 394 49.7
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.2e-79 300.8 357 54.3
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.6e-79 300.4 319 58.3
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 3.6e-79 299.3 324 56.2
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 6.2e-79 298.5 331 54.1
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 6.2e-79 298.5 322 55.6
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 6.2e-79 298.5 343 53.9
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 8.0e-79 298.1 327 55.4
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.8e-78 297.0 331 54.7
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.0e-77 293.5 329 55.3
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 5.8e-77 292.0 342 52.3
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 7.5e-77 291.6 328 55.5
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.3e-76 290.8 342 52.0
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 2.9e-76 289.7 335 53.4
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 3.7e-76 289.3 329 54.7
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 6.4e-76 288.5 329 52.6
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 6.4e-76 288.5 341 51.3
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.1e-75 287.7 336 54.8
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 5.4e-75 285.4 330 54.2
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 9.2e-75 284.6 200 79.5
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 1.6e-74 283.9 321 53.9
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 4.6e-74 282.3 343 50.4
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 3.0e-73 279.6 331 51.7
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.9e-72 276.9 329 49.8
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 4.3e-72 275.8 263 57.8
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.6e-71 273.9 260 61.9
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.6e-71 272.7 243 61.3
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.0e-70 269.2 345 48.7
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.6e-69 266.5 327 53.5
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 9.9e-69 264.6 265 59.6
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 4.9e-68 262.3 329 48.9
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.4e-67 260.8 320 50.6
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.4e-67 258.8 323 49.5
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.1e-66 256.9 319 48.9
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.7e-66 256.5 327 49.2
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 4.6e-66 255.8 344 48.3
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 2.1e-63 246.9 324 48.8
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 2.8e-63 246.5 324 49.1
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.8e-62 243.8 341 47.8
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 4.6e-58 229.2 258 54.3
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.1e-54 218.0 305 51.1
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 4.9e-44 182.6 241 49.0
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.1e-43 181.4 343 41.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 9.6e-32 141.7 397 31.2
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.7e-26 123.6 332 32.8
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.6e-26 122.9 222 39.6
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 5.7e-24 115.9 146 49.3
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.8e-17 94.4 159 42.1
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 4.3e-16 89.7 91 51.6
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 6.9e-14 82.4 137 41.6
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 3.3e-08 63.5 173 31.8
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 5.7e-08 62.8 65 53.8
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.8e-07 60.5 344 25.0
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 4.8e-07 59.7 146 34.2


User provided reference genes

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