Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 1.0e-120 436.8 224 100.0
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 1.0e-120 436.8 224 100.0
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.8e-112 408.3 225 91.6
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 4.0e-109 398.3 238 87.0
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 4.8e-107 391.3 214 91.6
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 8.5e-104 380.6 225 83.1
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 8.0e-102 374.0 226 81.4
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.3e-101 372.5 225 81.8
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 3.4e-100 368.6 214 84.6
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 5.7e-100 367.9 227 80.6
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 7.5e-100 367.5 227 81.1
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 2.8e-99 365.5 214 83.2
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 2.8e-99 365.5 214 83.2
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 4.8e-99 364.8 229 79.9
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.5e-95 353.2 225 77.8
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.9e-95 352.8 226 79.6
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 3.2e-95 352.1 229 79.5
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 3.5e-89 332.0 215 77.7
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 2.9e-83 312.4 227 67.4
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 9.2e-82 307.4 222 70.3
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.2e-78 297.0 209 70.8
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.4e-77 293.5 208 70.7
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 8.9e-77 290.8 210 70.0
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.0e-76 289.7 209 69.4
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 2.2e-75 286.2 206 67.5
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 3.7e-75 285.4 200 70.0
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.4e-74 281.6 209 66.5
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 5.4e-74 281.6 224 65.2
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 7.0e-74 281.2 216 64.8
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 7.0e-74 281.2 201 70.1
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 7.0e-74 281.2 209 67.0
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 3.5e-73 278.9 206 67.5
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 4.6e-73 278.5 208 66.8
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.0e-73 278.1 201 67.2
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 6.0e-73 278.1 210 65.2
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 7.8e-73 277.7 209 65.1
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.7e-72 276.6 202 68.8
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 2.3e-72 276.2 207 66.2
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 5.0e-72 275.0 206 62.6
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.0e-72 275.0 222 63.1
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 5.0e-72 275.0 224 62.1
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 5.0e-72 275.0 224 62.5
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 6.6e-72 274.6 209 65.6
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 8.6e-72 274.2 206 66.0
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 1.1e-71 273.9 209 67.0
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 1.1e-71 273.9 208 69.2
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 3.3e-71 272.3 207 64.3
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 4.3e-71 271.9 207 65.2
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 4.3e-71 271.9 208 64.4
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 5.6e-71 271.6 209 64.1
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 7.3e-71 271.2 221 61.5
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 7.3e-71 271.2 224 62.5
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 9.5e-71 270.8 206 66.0
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-70 270.4 167 79.6
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.2e-70 270.4 209 63.6
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 2.1e-70 269.6 205 65.9
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 2.8e-70 269.2 205 65.4
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 8.1e-70 267.7 213 64.3
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-69 267.3 208 66.3
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-69 267.3 208 66.3
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 1.1e-69 267.3 212 63.2
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.4e-69 266.9 203 66.0
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.4e-69 266.9 206 65.5
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 1.8e-69 266.5 210 66.2
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.8e-69 266.5 206 63.1
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.3e-69 266.2 201 64.7
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 4.0e-69 265.4 208 63.0
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 6.8e-69 264.6 202 65.3
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 8.9e-69 264.2 206 65.0
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.2e-68 263.8 205 67.3
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 4.4e-68 261.9 213 62.4
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.7e-67 260.0 219 59.8
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 2.2e-67 259.6 209 62.7
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 2.2e-67 259.6 213 61.0
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 2.2e-67 259.6 215 62.8
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 2.9e-67 259.2 214 61.7
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 3.7e-67 258.8 207 65.2
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 3.7e-67 258.8 212 63.7
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 4.9e-67 258.5 207 62.8
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 4.9e-67 258.5 207 63.8
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 6.4e-67 258.1 206 60.2
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 8.3e-67 257.7 206 63.6
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 8.3e-67 257.7 203 64.0
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 8.3e-67 257.7 205 64.9
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.1e-66 257.3 215 61.9
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 4.1e-66 255.4 206 61.2
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 9.2e-66 254.2 211 60.2
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.2e-65 253.8 208 64.4
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.0e-64 250.8 216 58.8
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 1.0e-64 250.8 200 59.5
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.7e-64 250.0 214 58.9
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.7e-64 250.0 208 58.2
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.7e-64 250.0 202 59.9
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 2.3e-64 249.6 206 59.2
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 5.1e-64 248.4 217 59.0
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 5.1e-64 248.4 217 59.0
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 6.6e-64 248.1 216 58.3
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.5e-63 246.9 215 58.1
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 9.5e-63 244.2 202 58.9
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 3.6e-62 242.3 213 57.7
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 6.2e-62 241.5 210 59.5
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.4e-61 240.4 210 60.5
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 5.2e-61 238.4 211 59.2
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 5.2e-61 238.4 214 56.5
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.2e-60 237.3 209 58.4
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 4.4e-60 235.3 220 56.4
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 5.8e-60 235.0 126 94.4
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 5.8e-60 235.0 265 49.8
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 5.8e-60 235.0 265 49.8
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.2e-54 217.2 213 55.9
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.1e-54 216.5 198 54.5
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 3.1e-53 212.6 197 57.9
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 9.9e-52 207.6 208 52.4
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 6.4e-51 204.9 202 54.5
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 8.4e-51 204.5 213 45.1
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 1.5e-47 193.7 146 64.4
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 2.1e-46 189.9 120 80.0
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 2.3e-40 169.9 210 44.3
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 3.9e-40 169.1 214 43.0
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 3.9e-40 169.1 204 51.0
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.5e-39 167.2 211 44.5
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 4.3e-39 165.6 235 40.4
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 9.6e-39 164.5 219 48.9
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 8.7e-32 141.4 205 42.9
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.3e-31 139.4 174 47.7
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.4e-26 124.0 113 58.4
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.0e-20 103.6 135 43.0
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 3.2e-18 96.3 67 61.2
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 3.0e-16 89.7 78 57.7
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.9e-16 89.4 61 60.7
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 5.1e-16 89.0 205 33.7
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 8.7e-16 88.2 184 35.9
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.3e-13 79.0 102 43.1
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.3e-11 74.3 77 51.9


User provided reference genes

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