Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-175 619.4 400 100.0
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 3.1e-173 612.1 400 99.2
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-168 596.7 398 98.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.0e-152 543.9 404 91.3
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 2.8e-150 535.8 402 89.1
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 4.0e-120 435.6 416 74.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.9e-115 419.1 406 73.9
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 4.0e-112 409.1 435 67.6
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 5.4e-109 398.7 436 68.3
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.2e-108 397.5 413 71.2
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 2.3e-107 393.3 405 71.6
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 3.3e-106 389.4 406 61.3
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 7.3e-106 388.3 418 72.2
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-104 384.4 405 70.4
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.1e-104 382.9 405 69.1
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 7.6e-103 378.3 405 68.6
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 2.4e-96 356.7 436 63.3
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.7e-94 350.5 388 70.1
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-89 334.3 380 55.0
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 2.8e-89 333.2 414 61.8
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 3.1e-88 329.7 413 65.9
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 4.9e-86 322.4 411 64.0
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.6e-81 307.4 469 54.4
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.7e-78 297.4 418 52.6
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 7.4e-66 255.4 201 70.1
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.8e-65 252.7 471 53.9
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.7e-60 236.9 446 54.5
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.4e-48 198.0 448 37.1
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.4e-48 198.0 448 37.1
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.6e-44 184.5 445 41.6
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 2.0e-42 177.6 441 36.5
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.4e-42 176.4 453 39.1
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 9.7e-42 175.3 431 35.3
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 9.7e-42 175.3 433 33.7
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.7e-41 174.5 435 35.4
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 8.2e-41 172.2 427 42.6
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 5.3e-40 169.5 458 35.6
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.6e-39 167.2 475 32.8
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 2.5e-37 160.6 425 39.5
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.6e-36 156.8 419 37.2
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.7e-36 156.4 428 35.5
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 8.0e-36 155.6 434 39.2
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.7e-34 148.7 415 37.6
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 9.7e-34 148.7 415 37.6
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.3e-33 148.3 439 35.1
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.7e-33 146.7 440 32.0
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.3e-33 146.0 423 31.7
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 8.2e-33 145.6 426 34.5
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 2.4e-32 144.1 444 32.2
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 2.4e-32 144.1 435 36.1
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 3.1e-32 143.7 237 46.0
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.2e-30 137.5 446 30.3
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 5.0e-30 136.3 453 30.9
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.5e-29 134.8 454 29.3
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 2.5e-29 134.0 97 72.2
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.2e-29 133.7 435 32.0
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.2e-29 133.7 236 40.7
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.2e-29 133.3 404 31.4
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 5.5e-29 132.9 450 34.9
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.5e-29 132.9 409 30.1
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.5e-29 132.9 409 30.1
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.5e-29 132.9 409 28.9
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.5e-29 132.9 409 34.0
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.1e-28 131.0 197 45.2
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 2.1e-28 131.0 468 32.9
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.6e-28 130.2 464 32.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.6e-28 130.2 447 33.8
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.6e-28 130.2 464 32.5
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.0e-28 129.0 455 29.5
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.4e-27 128.3 443 30.2
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.4e-27 128.3 435 35.6
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.4e-27 128.3 430 38.1
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.8e-27 127.9 243 39.5
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.8e-27 127.9 245 40.4
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-27 127.5 415 34.5
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 3.0e-27 127.1 468 31.0
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 3.0e-27 127.1 419 29.6
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 6.8e-27 125.9 456 36.6
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.2e-26 125.2 447 30.4
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-26 124.8 453 28.9
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 1.3e-25 121.7 453 37.5
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.7e-25 121.3 430 37.7
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.7e-25 121.3 450 37.3
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 3.7e-25 120.2 430 39.3
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-25 120.2 430 39.3
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.8e-25 119.8 430 39.5
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 6.3e-25 119.4 419 30.5
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.4e-24 117.5 440 32.3
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 2.4e-24 117.5 239 39.7
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 4.1e-24 116.7 439 30.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 5.4e-24 116.3 433 32.8
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 7.0e-24 115.9 223 40.8
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.6e-23 114.8 422 38.6
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 3.5e-23 113.6 440 36.4
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 5.9e-23 112.8 233 38.6
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.0e-22 112.1 232 37.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.3e-22 111.7 191 42.4
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.9e-22 110.5 192 45.3
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.1e-21 108.6 444 29.3
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 1.9e-21 107.8 422 30.8
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.2e-21 107.1 373 31.4
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 3.6e-20 103.6 438 29.0
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 4.7e-20 103.2 131 49.6
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 8.0e-20 102.4 430 34.7
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.0e-19 102.1 231 36.8
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.8e-19 101.3 443 29.1
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 3.0e-19 100.5 243 35.0
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 5.2e-19 99.8 195 39.5
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 5.2e-19 99.8 231 36.4
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 6.8e-19 99.4 231 36.8
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 8.8e-19 99.0 247 35.2
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.2e-18 98.6 247 36.8
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.0e-18 97.8 451 29.5
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 4.4e-18 96.7 176 38.6
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 5.7e-18 96.3 209 36.8
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 2.8e-17 94.0 404 29.2
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 8.3e-17 92.4 435 33.8
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.4e-16 90.9 414 27.5
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 2.4e-16 90.9 248 35.1
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 2.4e-16 90.9 248 35.1
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 3.1e-16 90.5 194 37.1
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 7.0e-16 89.4 246 32.9
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 7.0e-16 89.4 246 32.9
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 7.8e-15 85.9 392 27.3
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 7.8e-15 85.9 392 27.3
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 7.8e-15 85.9 195 39.5
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.7e-14 84.7 207 38.2
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 2.3e-14 84.3 207 38.2
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 8.6e-14 82.4 221 34.4
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.5e-13 80.9 263 34.6
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 4.3e-13 80.1 438 27.2
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 5.6e-13 79.7 188 35.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 5.6e-13 79.7 420 26.7
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 4.7e-12 76.6 206 36.9
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 6.1e-12 76.3 157 35.7
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 6.1e-12 76.3 348 27.0
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 6.1e-12 76.3 184 34.2
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 5.2e-11 73.2 429 26.3
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 5.2e-11 73.2 430 26.3
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.5e-10 71.6 249 30.9
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.6e-10 70.9 235 31.5
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 3.7e-09 67.0 432 25.9
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 3.7e-09 67.0 142 33.1
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 4.9e-09 66.6 112 36.6
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 8.3e-09 65.9 213 33.8
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.4e-08 65.1 104 46.2
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 3.5e-07 60.5 273 27.1
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.6e-07 60.1 114 42.1


User provided reference genes

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