Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 4.9e-252 874.0 447 100.0
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 4.1e-251 870.9 447 99.6
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 7.6e-237 823.5 447 95.1
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 8.4e-220 766.9 447 90.8
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 1.4e-214 749.6 447 87.5
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 1.6e-210 736.1 453 85.2
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 1.1e-208 729.9 447 85.0
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 3.3e-208 728.4 447 84.8
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.3e-207 726.5 447 84.1
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 5.0e-204 714.5 448 84.8
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 2.1e-202 709.1 450 84.0
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 2.3e-201 705.7 448 82.4
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 2.9e-196 688.7 447 80.1
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 4.5e-189 664.8 446 77.1
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 1.1e-174 617.1 448 69.6
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 6.6e-172 607.8 447 68.5
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 3.6e-170 602.1 445 67.4
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 8.0e-170 600.9 445 67.2
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.4e-169 600.1 445 67.4
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 8.3e-167 590.9 442 67.4
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 4.1e-166 588.6 445 66.1
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 4.1e-166 588.6 445 66.3
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 3.5e-165 585.5 445 65.8
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 4.5e-165 585.1 437 67.0
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 7.8e-165 584.3 444 67.1
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 1.7e-164 583.2 466 63.3
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 5.0e-164 581.6 452 65.5
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 8.6e-164 580.9 445 65.4
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.9e-163 579.7 445 65.4
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 9.5e-163 577.4 451 65.4
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 9.5e-163 577.4 445 65.8
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 9.5e-163 577.4 443 65.5
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 1.0e-161 573.9 443 64.8
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 6.8e-161 571.2 488 61.9
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 8.9e-161 570.9 445 65.4
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 8.9e-161 570.9 445 65.6
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 3.4e-160 568.9 443 64.8
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 4.4e-160 568.5 437 64.5
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 1.7e-159 566.6 450 64.4
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 2.9e-159 565.8 445 63.6
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 4.9e-159 565.1 445 64.3
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 3.2e-158 562.4 445 63.6
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 1.6e-157 560.1 444 63.5
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 2.3e-156 556.2 444 62.8
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 3.9e-156 555.4 444 63.1
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 8.6e-156 554.3 443 63.7
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 1.9e-155 553.1 439 62.9
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 5.6e-155 551.6 443 64.1
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 1.2e-154 550.4 445 62.2
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 2.8e-154 549.3 443 62.3
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 3.6e-154 548.9 447 61.5
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 1.4e-153 547.0 439 62.4
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.4e-153 547.0 453 61.1
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 3.1e-153 545.8 443 63.2
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 5.2e-153 545.0 447 61.5
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 6.8e-153 544.7 445 61.1
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 1.5e-152 543.5 436 63.1
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 5.8e-152 541.6 445 61.3
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 1.3e-151 540.4 438 63.0
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 4.9e-151 538.5 445 60.7
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 6.4e-151 538.1 438 62.6
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 8.3e-151 537.7 454 59.7
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 8.3e-151 537.7 437 62.2
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 3.2e-150 535.8 438 62.6
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 9.2e-150 534.3 445 62.7
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 2.1e-149 533.1 441 61.7
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 3.5e-149 532.3 445 60.9
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 1.0e-148 530.8 442 60.2
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 1.7e-148 530.0 442 60.9
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 3.9e-148 528.9 437 60.4
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.1e-147 527.3 475 59.8
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 1.1e-147 527.3 445 62.2
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 4.3e-147 525.4 411 66.4
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 9.5e-147 524.2 491 55.8
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 2.1e-146 523.1 441 60.5
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.8e-146 522.7 473 60.0
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 7.5e-144 514.6 489 55.6
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 3.9e-140 502.3 438 59.4
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 4.0e-137 492.3 484 55.0
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 1.7e-135 486.9 484 52.3
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 3.8e-135 485.7 365 67.9
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.4e-134 483.8 445 57.8
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 2.4e-134 483.0 476 53.2
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 4.2e-134 482.3 440 54.8
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 3.5e-133 479.2 436 57.3
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.7e-132 476.9 436 57.1
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.5e-131 473.8 513 51.1
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 1.5e-131 473.8 430 57.9
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 6.2e-130 468.4 445 56.0
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.2e-128 464.2 308 74.7
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.4e-126 456.4 440 54.3
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 5.1e-124 448.7 497 51.1
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 3.3e-123 446.0 441 56.0
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 4.8e-122 442.2 373 62.2
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 2.6e-120 436.4 411 56.2
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 3.2e-118 429.5 270 84.8
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 5.4e-118 428.7 440 58.4
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 8.7e-116 421.4 440 57.0
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 4.3e-115 419.1 449 49.2
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 9.9e-112 407.9 437 50.6
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 3.0e-108 396.4 347 64.0
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 1.6e-106 390.6 350 61.7
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 7.9e-101 371.7 312 61.9
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 2.8e-98 363.2 445 46.1
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 9.4e-94 348.2 454 43.6
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.6e-93 347.4 311 58.2
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 4.6e-93 345.9 214 78.5
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 6.1e-93 345.5 214 76.6
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 7.9e-93 345.1 239 70.7
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 2.8e-90 336.7 442 45.9
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 5.3e-89 332.4 263 63.1
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 6.1e-85 318.9 293 57.7
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 3.9e-84 316.2 415 43.6
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 4.8e-74 282.7 387 44.4
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 4.0e-68 263.1 395 42.0
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 2.1e-61 240.7 143 77.6
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 2.0e-56 224.2 253 49.4
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 5.9e-56 222.6 154 70.1
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 2.5e-54 217.2 431 33.4
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 4.2e-54 216.5 167 67.7
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 2.7e-48 197.2 125 73.6
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.7e-42 177.9 166 56.0
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.4e-41 174.1 208 48.1
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 2.5e-38 164.1 109 78.9
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 2.8e-37 160.6 301 35.5
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 2.8e-37 160.6 433 30.3
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 5.4e-33 146.4 163 47.2
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 6.2e-29 132.9 101 61.4
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 8.3e-26 122.5 127 50.4
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.4e-25 121.7 88 69.3
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.6e-21 108.2 335 27.2
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 2.4e-20 104.4 131 44.3
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.4e-20 104.4 65 70.8
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.4e-19 100.1 95 48.4
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.1e-16 91.3 113 47.8
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 8.7e-15 85.9 79 53.2
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 8.7e-15 85.9 79 57.0
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 4.3e-06 57.0 229 24.5


User provided reference genes

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