Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 0.0e+00 1981.1 1009 100.0
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1970.7 1009 99.7
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 0.0e+00 1949.9 1019 97.9
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 0.0e+00 1929.8 1013 97.7
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 0.0e+00 1917.5 1010 97.4
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1875.5 1010 94.3
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 0.0e+00 1797.3 1013 90.7
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 0.0e+00 1763.0 1017 88.8
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 0.0e+00 1683.3 1013 86.3
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 0.0e+00 1646.7 1013 84.5
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 0.0e+00 1635.2 1013 83.0
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 0.0e+00 1609.3 1013 82.1
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 0.0e+00 1437.9 1026 74.1
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 0.0e+00 1223.0 730 87.7
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1092.4 1003 59.0
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1086.6 965 61.2
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1083.9 999 58.9
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1081.2 1003 59.3
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1079.3 1021 59.9
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 6.9e-312 1074.7 996 60.7
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 1.4e-310 1069.7 1026 59.5
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 6.8e-310 1067.4 944 61.2
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 2.2e-308 1062.4 1036 57.7
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 1.1e-307 1060.1 947 60.8
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 4.1e-307 1058.1 990 59.8
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 1.0e-305 1053.5 974 59.7
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 4.3e-304 1048.1 948 60.3
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 5.2e-302 1041.2 1021 57.7
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 2.0e-301 1039.3 1025 57.1
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 2.6e-301 1038.9 945 61.1
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 5.8e-301 1037.7 1019 58.3
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 1.7e-300 1036.2 943 60.3
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 4.1e-299 1031.6 995 57.3
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 3.5e-298 1028.5 1041 56.5
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 4.6e-298 1028.1 1025 57.3
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 7.8e-298 1027.3 1024 57.1
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.5e-296 1023.1 1025 56.8
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 3.3e-296 1021.9 1024 57.2
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 4.3e-296 1021.5 980 57.4
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 4.3e-296 1021.5 954 59.7
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 6.2e-295 1017.7 983 58.5
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 1.1e-294 1016.9 980 57.0
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 2.4e-294 1015.8 984 56.9
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 1.6e-290 1003.0 1022 56.3
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 2.1e-290 1002.7 1031 55.7
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.7e-290 1002.3 981 57.9
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 5.1e-289 998.0 977 56.0
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 4.3e-288 995.0 981 56.8
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 2.4e-286 989.2 1016 55.9
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 1.6e-282 976.5 1029 53.6
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 2.1e-279 966.1 1001 54.2
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 7.6e-277 957.6 899 60.3
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.9e-276 955.7 996 53.5
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 3.7e-271 938.7 963 54.0
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 1.4e-270 936.8 939 55.1
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 2.6e-269 932.6 951 56.0
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 1.0e-268 930.6 922 55.7
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 4.2e-267 925.2 990 53.4
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 4.6e-266 921.8 916 58.4
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 2.4e-262 909.4 1010 51.9
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 2.3e-257 892.9 820 61.1
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 5.1e-257 891.7 854 59.1
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 6.3e-255 884.8 958 54.1
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 6.5e-252 874.8 953 52.9
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 4.2e-251 872.1 989 52.5
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 4.2e-243 845.5 961 53.0
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 4.2e-243 845.5 838 57.9
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 1.2e-242 844.0 1021 47.3
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 3.6e-242 842.4 858 58.0
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 3.9e-241 839.0 911 54.8
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 2.6e-240 836.3 924 54.3
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 4.8e-239 832.0 836 57.1
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 8.2e-239 831.2 836 58.0
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 1.8e-238 830.1 918 52.1
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 2.0e-237 826.6 810 59.4
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 4.5e-237 825.5 848 57.7
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 1.3e-236 823.9 752 60.9
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.2e-236 823.2 783 59.4
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 1.1e-235 820.8 742 62.1
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 2.1e-234 816.6 830 56.6
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 1.0e-233 814.3 1013 49.0
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 1.2e-232 810.8 892 54.7
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 1.3e-231 807.4 927 53.2
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 1.9e-227 793.5 603 70.8
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 3.2e-227 792.7 718 61.3
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.8e-225 786.9 787 57.8
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 2.2e-223 780.0 780 57.7
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 2.2e-220 770.0 844 53.4
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 9.8e-216 754.6 770 56.4
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 8.6e-212 741.5 1006 46.7
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 3.6e-210 736.1 769 53.8
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 3.6e-210 736.1 688 59.9
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 1.2e-205 721.1 1033 45.8
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 1.1e-198 698.0 678 56.9
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 6.6e-196 688.7 811 51.9
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.2e-192 677.9 799 52.4
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.6e-186 657.5 730 54.5
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 2.8e-186 656.8 819 48.5
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 1.7e-183 647.5 717 51.5
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 2.7e-173 613.6 904 42.0
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 3.8e-167 593.2 732 48.9
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 2.9e-159 567.0 1048 39.3
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 5.3e-153 546.2 598 55.7
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 3.4e-152 543.5 931 38.1
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 1.3e-151 541.6 582 55.7
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 8.5e-143 512.3 738 41.5
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 2.1e-133 481.1 1037 35.6
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 8.8e-124 449.1 562 46.1
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 4.6e-88 330.5 426 48.8
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 2.5e-62 245.0 206 63.1
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 5.8e-59 233.8 200 64.0
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 1.7e-50 205.7 413 32.4
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 9.6e-46 189.9 199 59.3
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 6.0e-40 170.6 318 34.3
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.3e-26 126.3 536 26.5
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 4.3e-22 111.3 115 53.0
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 2.6e-19 102.1 76 67.1
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 2.3e-15 89.0 62 72.6
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 2.0e-14 85.9 88 55.7
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-14 83.6 265 26.4
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-13 83.2 130 40.8
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 7.7e-11 73.9 41 90.2
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.4e-09 69.7 56 50.0
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 4.2e-09 68.2 38 89.5
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 2.6e-06 58.9 70 40.0


User provided reference genes

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