Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 3.4e-65 251.5 126 100.0
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 6.3e-64 247.3 126 98.4
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 1.8e-42 176.0 98 89.8
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 8.1e-19 97.4 78 69.2
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 8.1e-19 97.4 78 69.2
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 8.1e-19 97.4 78 69.2
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 8.1e-19 97.4 78 69.2
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 8.1e-19 97.4 78 69.2
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 8.1e-19 97.4 78 69.2
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 1.8e-18 96.3 78 67.9
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.8e-18 96.3 78 67.9
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 2.4e-18 95.9 78 66.7
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 4.0e-18 95.1 78 67.9
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 2.6e-17 92.4 78 65.4
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 2.9e-16 89.0 78 62.8
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 2.1e-14 82.8 93 53.8
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 1.7e-13 79.7 79 54.4
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 3.9e-13 78.6 77 54.5
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 6.6e-13 77.8 94 46.8
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 1.1e-12 77.0 76 55.3
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 2.5e-12 75.9 77 50.6
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 2.5e-12 75.9 77 49.4
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 3.3e-12 75.5 77 50.6
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 3.3e-12 75.5 77 51.9
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 3.3e-12 75.5 79 51.9
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 3.3e-12 75.5 79 51.9
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 3.3e-12 75.5 77 53.2
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 5.6e-12 74.7 77 53.2
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 5.6e-12 74.7 77 48.1
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 5.6e-12 74.7 77 48.1
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 7.4e-12 74.3 79 50.6
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 7.4e-12 74.3 79 50.6
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 7.4e-12 74.3 77 50.6
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 7.4e-12 74.3 77 50.6
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 7.4e-12 74.3 77 50.6
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 9.6e-12 73.9 79 49.4
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 1.3e-11 73.6 77 50.6
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 1.3e-11 73.6 79 51.9
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 1.6e-11 73.2 79 48.1
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 1.6e-11 73.2 77 51.9
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 2.1e-11 72.8 76 50.0
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 2.8e-11 72.4 79 48.1
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 2.8e-11 72.4 79 48.1
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 3.6e-11 72.0 77 50.6
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 4.8e-11 71.6 76 50.0
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 4.8e-11 71.6 77 51.9
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 4.8e-11 71.6 77 49.4
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 4.8e-11 71.6 77 51.9
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 4.8e-11 71.6 79 49.4
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 4.8e-11 71.6 79 49.4
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 6.2e-11 71.2 77 50.6
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 6.2e-11 71.2 77 50.6
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 6.2e-11 71.2 77 50.6
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 6.2e-11 71.2 77 50.6
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 8.1e-11 70.9 77 49.4
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 8.1e-11 70.9 79 49.4
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 8.1e-11 70.9 77 46.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 8.1e-11 70.9 77 46.8
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 8.1e-11 70.9 95 44.2
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 1.8e-10 69.7 77 49.4
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 1.8e-10 69.7 79 45.6
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 1.8e-10 69.7 76 51.3
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 1.8e-10 69.7 79 49.4
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 2.4e-10 69.3 79 46.8
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 2.4e-10 69.3 76 47.4
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 3.1e-10 68.9 76 48.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 4.0e-10 68.6 77 46.8
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 4.0e-10 68.6 75 48.0
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 5.3e-10 68.2 60 60.0
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 5.3e-10 68.2 78 50.0
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 5.3e-10 68.2 77 45.5
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 5.3e-10 68.2 77 45.5
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 5.3e-10 68.2 79 49.4
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 6.9e-10 67.8 77 45.5
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 6.9e-10 67.8 75 48.0
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 9.0e-10 67.4 76 47.4
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 1.5e-09 66.6 77 44.2
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 1.5e-09 66.6 76 44.7
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 2.6e-09 65.9 77 44.2
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 2.6e-09 65.9 75 48.0
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.5e-09 65.1 79 43.0
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 5.8e-09 64.7 77 44.2
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 5.8e-09 64.7 79 40.5
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 7.6e-09 64.3 79 40.5
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 7.6e-09 64.3 79 40.5
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 7.6e-09 64.3 76 44.7
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 9.9e-09 63.9 75 44.0
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.7e-08 63.2 76 43.4
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 2.2e-08 62.8 76 43.4
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 2.9e-08 62.4 76 44.7
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 3.8e-08 62.0 77 41.6
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 4.9e-08 61.6 79 39.2
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 4.9e-08 61.6 76 44.7
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 4.9e-08 61.6 77 41.6
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 1.1e-07 60.5 60 53.3
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.1e-07 60.5 75 42.7
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-07 59.7 57 56.1
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 2.4e-07 59.3 60 51.7
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 3.2e-07 58.9 57 52.6
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 3.2e-07 58.9 90 36.7
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 4.2e-07 58.5 57 52.6
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 4.2e-07 58.5 57 52.6
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 4.2e-07 58.5 78 39.7
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 5.5e-07 58.2 57 54.4
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.5e-07 58.2 80 38.8
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 1.2e-06 57.0 74 45.9
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 2.7e-06 55.8 60 50.0
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.6e-06 55.1 60 46.7
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 4.6e-06 55.1 73 39.7


User provided reference genes

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