Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 1.9e-93 345.9 182 100.0
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 5.3e-80 301.2 162 97.5
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 5.3e-80 301.2 162 97.5
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 2.3e-54 216.1 185 73.0
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 2.8e-52 209.1 183 71.6
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 3.6e-52 208.8 184 70.7
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 2.9e-49 199.1 178 70.8
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 2.9e-49 199.1 178 70.8
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 7.3e-45 184.5 190 64.7
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 5.4e-40 168.3 191 59.2
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 4.3e-29 132.1 186 50.5
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 1.1e-27 127.5 192 50.5
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.1e-27 127.5 180 52.2
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.9e-25 119.4 133 54.9
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.2e-23 114.0 182 49.5
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 1.6e-23 113.6 186 47.3
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 2.1e-23 113.2 169 50.9
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 4.6e-23 112.1 186 46.8
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 6.0e-23 111.7 186 46.8
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.0e-22 110.9 193 45.1
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 4.8e-20 102.1 186 44.1
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 4.5e-18 95.5 127 50.4
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 9.3e-16 87.8 129 46.5
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.7e-15 86.3 132 47.0
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 6.0e-15 85.1 123 48.0
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.0e-14 84.3 130 46.9
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.3e-14 84.0 123 44.7
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 3.9e-14 82.4 160 38.1
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 3.9e-14 82.4 125 44.8
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.9e-13 80.1 127 44.1
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.9e-13 80.1 127 46.5
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 2.5e-13 79.7 104 49.0
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 3.3e-13 79.3 190 32.1
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 4.3e-13 79.0 137 42.3
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 9.6e-13 77.8 130 43.8
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 9.6e-13 77.8 131 46.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 9.6e-13 77.8 123 46.3
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.6e-12 77.0 147 42.2
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.1e-12 76.6 127 45.7
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 2.1e-12 76.6 125 44.8
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.1e-12 76.6 127 44.9
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.8e-12 76.3 130 42.3
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 3.6e-12 75.9 77 58.4
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.8e-12 75.5 127 44.1
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 4.8e-12 75.5 127 44.1
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 6.2e-12 75.1 131 44.3
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.2e-12 75.1 90 52.2
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 8.1e-12 74.7 150 36.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.1e-11 74.3 126 45.2
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 1.1e-11 74.3 129 38.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.4e-11 73.9 162 37.0
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.4e-11 73.9 179 34.6
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 1.8e-11 73.6 122 43.4
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.8e-11 73.6 76 57.9
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.8e-11 73.6 90 46.7
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.8e-11 73.6 76 55.3
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.8e-11 73.6 161 37.3
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.8e-11 73.6 122 42.6
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.8e-11 73.6 84 54.8
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 2.4e-11 73.2 74 59.5
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 3.1e-11 72.8 121 47.1
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.1e-11 72.8 152 36.8
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.1e-11 72.8 131 40.5
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 4.0e-11 72.4 74 59.5
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 5.3e-11 72.0 74 58.1
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 5.3e-11 72.0 76 52.6
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.3e-11 72.0 76 52.6
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 5.3e-11 72.0 74 56.8
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 5.3e-11 72.0 132 43.2
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.3e-11 72.0 142 37.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 6.9e-11 71.6 141 37.6
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 6.9e-11 71.6 150 35.3
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.2e-10 70.9 76 51.3
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-10 70.9 136 39.0
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.5e-10 70.5 127 41.7
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.5e-10 70.5 87 50.6
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.5e-10 70.5 75 53.3
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 1.5e-10 70.5 77 58.4
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 2.0e-10 70.1 134 36.6
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 2.0e-10 70.1 134 36.6
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.6e-10 69.7 158 36.1
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.6e-10 69.7 76 53.9
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.4e-10 69.3 74 55.4
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.4e-10 69.3 170 33.5
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 3.4e-10 69.3 152 35.5
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 3.4e-10 69.3 188 36.2
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 4.5e-10 68.9 121 43.8
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 9.9e-10 67.8 142 35.2
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.3e-09 67.4 131 40.5
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.3e-09 67.4 72 55.6
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 1.7e-09 67.0 115 42.6
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 1.7e-09 67.0 133 37.6
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 1.7e-09 67.0 139 40.3
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 1.7e-09 67.0 124 36.3
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.7e-09 67.0 120 44.2
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 2.2e-09 66.6 157 35.0
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.2e-09 66.6 76 52.6
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.8e-09 65.9 134 37.3
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 4.9e-09 65.5 137 38.7
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 6.4e-09 65.1 72 55.6
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 6.4e-09 65.1 72 55.6
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 8.4e-09 64.7 84 46.4
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.9e-08 63.5 74 47.3
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 7.1e-08 61.6 125 38.4
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 9.3e-08 61.2 53 73.6
BraA09t37369Z Brassica rapa HOM05D004232 ORTHO05D004909 9.3e-08 61.2 65 61.5
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 9.3e-08 61.2 161 35.4
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 1.6e-07 60.5 139 35.3
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.1e-07 60.1 153 30.7
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 2.7e-07 59.7 166 31.9
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 2.7e-07 59.7 67 53.7
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.5e-07 59.3 114 36.0
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 4.6e-07 58.9 140 40.0
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 7.9e-07 58.2 70 50.0
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 3.0e-06 56.2 118 39.0
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 5.1e-06 55.5 78 44.9
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 6.7e-06 55.1 120 34.2
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 6.7e-06 55.1 65 53.8


User provided reference genes

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