Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 1.5e-127 459.5 232 100.0
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 4.1e-125 451.4 232 98.7
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 3.8e-123 444.9 229 98.3
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 1.4e-122 443.0 232 97.0
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 1.8e-117 426.0 236 93.2
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 1.0e-115 420.2 232 93.1
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 6.3e-102 374.4 233 85.8
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 6.3e-102 374.4 233 85.8
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 2.9e-91 339.0 238 77.7
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 3.8e-91 338.6 229 76.9
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 5.0e-91 338.2 233 79.0
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 1.6e-89 333.2 239 76.2
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 2.1e-89 332.8 238 76.9
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 2.8e-89 332.4 238 75.2
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 2.3e-88 329.3 228 78.5
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 1.0e-83 313.9 232 73.7
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 7.3e-82 307.8 231 72.7
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 3.1e-80 302.4 232 73.3
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 2.0e-79 299.7 214 78.0
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 1.2e-73 280.4 236 68.2
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 4.7e-73 278.5 214 74.8
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 3.3e-66 255.8 230 65.7
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 7.3e-58 228.0 236 58.5
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 3.4e-31 139.4 237 42.2
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 3.8e-30 136.0 230 40.9
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.8e-27 127.1 239 42.7
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 3.3e-26 122.9 232 40.1
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.6e-25 120.6 232 37.5
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.6e-25 120.6 232 37.5
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 4.8e-25 119.0 232 37.1
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 1.8e-24 117.1 234 38.0
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 2.4e-24 116.7 230 40.9
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 4.1e-24 115.9 236 38.1
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 5.3e-24 115.5 227 39.2
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 6.9e-24 115.2 238 37.4
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 9.0e-24 114.8 231 37.7
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.5e-23 114.0 229 38.0
AL1G34860 Arabidopsis lyrata HOM05D011160 ORTHO05D013203 3.4e-23 112.8 208 44.7
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 7.6e-23 111.7 244 35.7
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 7.6e-23 111.7 234 36.8
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 7.6e-23 111.7 229 38.4
Carub.0001s2113 Capsella rubella HOM05D011160 ORTHO05D013203 1.0e-22 111.3 217 42.4
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 2.2e-22 110.2 227 39.6
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 5.0e-22 109.0 242 37.6
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 1.4e-21 107.5 232 37.1
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 1.4e-21 107.5 236 36.4
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 3.2e-21 106.3 228 36.4
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 4.2e-21 105.9 236 38.1
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 5.5e-21 105.5 216 40.3
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 2.1e-20 103.6 232 37.9
CARHR022050 Cardamine hirsuta HOM05D011160 ORTHO05D013203 3.6e-20 102.8 222 42.8
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 6.1e-20 102.1 236 36.4
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 2.3e-19 100.1 233 35.2
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 1.5e-18 97.4 230 33.9
AT1G21695 Arabidopsis thaliana HOM05D011160 ORTHO05D013203 2.5e-18 96.7 234 39.7
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 2.5e-18 96.7 232 36.2
THA.LOC104800214 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 3.3e-18 96.3 213 38.0
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 7.4e-18 95.1 215 36.7
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 2.2e-17 93.6 229 33.2
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.2e-17 93.6 237 35.0
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 2.2e-17 93.6 242 34.3
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 4.8e-17 92.4 229 35.4
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 8.2e-17 91.7 228 33.3
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 1.1e-16 91.3 233 36.5
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 1.1e-16 91.3 232 34.1
BcaB07g32166 Brassica carinata HOM05D011160 ORTHO05D013203 1.4e-16 90.9 232 36.6
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 1.4e-16 90.9 229 35.4
Thhalv10009307m.g Eutrema salsugineum HOM05D011160 ORTHO05D013203 4.1e-16 89.4 204 43.1
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 5.3e-16 89.0 246 35.0
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 1.2e-15 87.8 245 33.5
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.2e-15 87.8 237 34.2
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 2.0e-15 87.0 229 34.1
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 3.4e-15 86.3 234 33.3
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 4.5e-15 85.9 229 32.3
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 1.0e-14 84.7 237 33.8
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 1.3e-14 84.3 239 32.6
Sp1g19250 Schrenkiella parvula HOM05D011160 ORTHO05D013203 2.2e-14 83.6 222 37.8
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 2.9e-14 83.2 216 33.3
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 8.5e-14 81.6 225 28.9
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 8.5e-14 81.6 232 32.8
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 1.4e-13 80.9 232 32.8
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 2.5e-13 80.1 221 32.1
BcaB03g14257 Brassica carinata HOM05D011160 ORTHO05D013203 3.2e-13 79.7 203 37.4
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 3.2e-13 79.7 235 31.1
A01p18880 Brassica napus HOM05D007332 ORTHO05D009297 9.4e-13 78.2 48 83.3
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 9.4e-13 78.2 239 30.5
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 1.6e-12 77.4 229 31.9
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 2.7e-12 76.6 228 32.5
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 1.0e-11 74.7 223 32.3
Prupe.1G492300 Prunus persica HOM05D007332 ORTHO05D009297 1.0e-11 74.7 235 30.2
A06p17780 Brassica napus HOM05D011160 ORTHO05D013203 1.4e-11 74.3 203 35.0
BraA06t24870Z Brassica rapa HOM05D011160 ORTHO05D013203 1.4e-11 74.3 203 35.0
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 1.4e-11 74.3 236 30.5
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 3.9e-11 72.8 201 32.8
C07p22010 Brassica napus HOM05D011160 ORTHO05D013203 6.7e-11 72.0 198 34.8
BcaC06g34900 Brassica carinata HOM05D011160 ORTHO05D013203 1.5e-10 70.9 198 34.3
BolC7t42731H Brassica oleracea HOM05D011160 ORTHO05D013203 1.5e-10 70.9 198 34.3
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 2.0e-10 70.5 218 31.7
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 3.3e-10 69.7 233 32.2
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 3.3e-10 69.7 258 29.8
Dinv14654 Davidia involucrata HOM05D007332 ORTHO05D009297 4.4e-10 69.3 224 29.0
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 5.7e-10 68.9 226 32.3
BraA07t29242Z Brassica rapa HOM05D011160 ORTHO05D013203 2.2e-09 67.0 201 37.8
BcaC05g26088 Brassica carinata HOM05D011160 ORTHO05D013203 3.7e-09 66.2 87 49.4
C05p20670 Brassica napus HOM05D011160 ORTHO05D013203 3.7e-09 66.2 87 49.4
BolC5t30766H Brassica oleracea HOM05D011160 ORTHO05D013203 3.7e-09 66.2 87 49.4
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 3.7e-09 66.2 231 30.7
Actinidia15225 Actinidia chinensis HOM05D007332 ORTHO05D009297 4.8e-09 65.9 81 45.7
A07p14960 Brassica napus HOM05D011160 ORTHO05D013203 6.3e-09 65.5 222 34.2
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 1.8e-08 63.9 201 30.8
MD15G1344600 Malus domestica HOM05D007332 ORTHO05D009297 3.1e-08 63.2 234 28.2
Hma1.2p1_0542F.1_g175020 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 1.5e-07 60.8 200 29.0
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 2.0e-07 60.5 205 28.3
Ca_16594_v3 Cicer arietinum L. HOM05D007332 ORTHO05D009297 3.4e-07 59.7 199 28.6
FAN15G1303 Fragaria x ananassa HOM05D007332 ORTHO05D009297 5.9e-07 58.9 211 29.9


User provided reference genes

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